Co-expression analysis

Gene ID	GmaAffx.18269.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g52310: protein kinase family protein / C-type lectin domain-containing protein (HF=1e-4)
Module size	7 genes
NF	0.16
%ile	37.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	0.97	GmaAffx.18269.1.A1_at	BU547468	-	-	1e-4	At1g52310	protein kinase family protein / C-type lectin domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.97	Gma.13750.1.A1_at	BU548394	-	-	1e-4	At4g24470	TIFY1	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.13237.1.S1_at	CD396623	-	-	2e-15	At4g22330	ATCES1	O.I.	H.G.	S.X.	Please select
0.12	15.1	0.98	Gma.7711.1.A1_at	BE658426	-	-	3e-26	At5g14170	CHC1	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.98	Gma.13676.1.A1_at	CD411025	-	-	2e-4	At1g71260	ATWHY2 (A. THALIANA WHIRLY 2)	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.98	Gma.6671.1.S1_at	BE659576	-	-	2e-24	At5g52820	WD-40 repeat family protein / notchless protein, putative	O.I.	H.G.	S.X.	Please select
0.08	11.0	0.98	Gma.1793.1.S1_x_at	AW349902	-	-	4e-2	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.6	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
6.1	98.5	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
6.0	98.5	GSM258503	Soybean shoot apical meristem, 2 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
5.9	98.5	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
5.9	98.5	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
5.8	98.4	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
5.8	98.4	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
5.8	98.4	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
5.7	98.4	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
5.6	98.3	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
5.4	98.2	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
5.4	98.2	GSM258500	Soybean shoot apical meristem, 6 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
5.4	98.2	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.0	97.2	GSM258505	Soybean shoot apical meristem, 6 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.0	97.2	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.5	96.6	GSM184829	Whole Seed at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.4	96.4	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.4	96.4	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage