Co-expression analysis

Gene ID	GmaAffx.17452.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g12370: ribosomal protein L10 family protein (HF=2e-1)
Module size	12 genes
NF	0.47
%ile	78.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.3	0.84	GmaAffx.17452.1.S1_at	AW458587	-	-	2e-1	At3g12370	ribosomal protein L10 family protein	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.92	GmaAffx.93356.1.S1_at	CF807350	-	-	2e+0	At5g47870	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.89	Gma.4438.4.S1_x_at	BE021855	-	-	2e-1	At5g63085	-	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.91	GmaAffx.84058.1.A1_s_at	CD396207	-	-	7e-4	At5g24530	DMR6 (DOWNY MILDEW RESISTANT 6)	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.92	Gma.4438.1.S1_at	CD396138	-	-	4e-5	At5g24530	DMR6 (DOWNY MILDEW RESISTANT 6)	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.92	Gma.4438.3.S1_x_at	BU764535	-	-	8e-1	At5g50050	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.93	Gma.4438.2.S1_at	BQ630502	-	-	5e+0	At5g33330	RNase H domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.89	GmaAffx.82048.1.S1_at	BI320672	-	-	1e-2	At4g13195	CLE44 (CLAVATA3/ESR-RELATED 44)	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.92	Gma.7470.1.A1_at	CD413105	-	-	4e-16	At2g31880	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.89	Gma.3367.1.S1_at	BU083449	-	-	3e+0	At2g27180	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.90	GmaAffx.56237.1.S1_at	BU578491	-	-	4e-12	At2g31880	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.90	GmaAffx.80842.1.S1_at	BE440732	-	-	8e-1	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	99.0	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.8	98.7	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.8	97.9	GSM170926	Rust Innoculated, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
3.8	97.0	GSM170927	Rust Innoculated, biological rep2	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
3.4	96.4	GSM293603	33_2059.2B.R199L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM294708	71_2577.2M.R286U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.1	95.8	GSM294692	61_2589.2M.R273L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage