Co-expression analysis

Gene ID	GmaAffx.14871.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g01760: lysine and histidine specific transporter, putative (HF=9e-1)
Module size	6 genes
NF	0.61
%ile	90.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.8	0.97	GmaAffx.14871.1.S1_at	BG510693	-	-	9e-1	At3g01760	lysine and histidine specific transporter, putative	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.97	GmaAffx.17305.1.S1_at	BM524663	-	-	3e+0	At5g61650	CYCP4	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.7924.3.S1_a_at	BI787925	-	-	2e-3	At4g24290	-	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.97	Gma.7924.3.S1_at	BI787925	-	-	2e-3	At4g24290	-	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.97	GmaAffx.82626.1.S1_at	BM108148	-	-	1e+0	At5g25600	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	GmaAffx.12540.1.S1_at	BE474761	-	-	1e-6	At1g33770	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	97.4	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM294007	5_3095.2F.R9F1U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, Contig18187_at, orthologous to the query gene, GmaAffx.14871.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	Contig18187_at	At3g01760	-	-	2e+0	At3g44860	FAMT (farnesoic acid carboxyl-O-methyltransferase)	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig196_s_at	At3g01760	-	-	1e-44	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.50	66.9	HO08B11S_at	At3g01760	-	-	1e+0	At1g23950	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	HU14G14r_at	At3g01760	-	-	5e-3	At5g24860	FPF1 (FLOWERING PROMOTING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	HU14G14r_s_at	At3g01760	-	-	5e-3	At5g24860	FPF1 (FLOWERING PROMOTING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig873_s_at	At3g01760	-	-	2e-121	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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