Co-expression analysis

Gene ID GmaAffx.13717.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g63180: pectate lyase family protein (HF=2e-63)
Module size 6 genes
NF 0.52
%ile 82.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.80.91GmaAffx.13717.1.S1_atBI316021--2e-63At5g63180pectate lyase family proteinO.I.H.G.S.X.
0.6080.70.90GmaAffx.12649.1.S1_s_atAW309146--3e-10At4g24780pectate lyase family proteinO.I.H.G.S.X.
0.5576.30.91Gma.1326.3.S1_atAI442263pectate lyase precursor-1e-47At4g24780pectate lyase family proteinO.I.H.G.S.X.
0.5071.70.93Gma.1326.1.S1_atCD397515pectate lyase precursor-1e-6At1g67750pectate lyase family proteinO.I.H.G.S.X.
0.3346.10.90Gma.6549.1.S1_atBM139635--3e-1At2g19990PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE)O.I.H.G.S.X.
0.2329.90.91Gma.1326.1.S1_a_atCD397515pectate lyase precursor-1e-6At1g67750pectate lyase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.097.2GSM24480717_CON.M2W3.CEL, Experimental replicate 3GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistanceLink to GEO
3.796.8GSM29414611_2345.2H.R292L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.796.8GSM24484726_CON.M2W1.CEL, Experimental replicate 1GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistanceLink to GEO
3.696.7GSM2449226_CON.M3W4.CEL, Experimental replicate 4GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistanceLink to GEO
3.696.7GSM29470367_2585.2M.R160L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.596.6GSM29347965_C099.1R.SLR2U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.496.4GSM2938782_3077.2E.SLE1U, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29304245_1093.1N.R057L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM24487933_CON.I5L3.CEL, Experimental replicate 3GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistanceLink to GEO
3.095.6GSM2932977_1197.1P.R122L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.095.6GSM29352037_2023.2A.R234U, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.2020.1.S1_s_at, orthologous to the query gene, GmaAffx.13717.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7493.8Ptp.2020.1.S1_s_atAt5g63180hypothetical protein-2e-9At3g27400pectate lyase family proteinO.I.H.G.S.X.
0.5078.6PtpAffx.212485.1.S1_s_atAt5g63180hypothetical protein-5e-2At5g41040transferase family proteinO.I.H.G.S.X.
0.4673.7Ptp.5677.1.S1_atAt5g63180hypothetical protein-3e-5At1g67750pectate lyase family proteinO.I.H.G.S.X.
0.2950.5PtpAffx.50265.1.S1_atAt5g63180hypothetical protein-1e-10At3g24230pectate lyase family proteinO.I.H.G.S.X.
0.2136.5PtpAffx.25473.1.S1_atAt5g63180hypothetical protein-6e-1At5g13140-O.I.H.G.S.X.
0.1932.7PtpAffx.50265.1.S1_s_atAt5g63180hypothetical protein-1e-10At3g24230pectate lyase family proteinO.I.H.G.S.X.
0.1219.6PtpAffx.219012.1.S1_s_atAt5g63180hypothetical protein-3e+0At3g0711060S ribosomal protein L13A (RPL13aA)O.I.H.G.S.X.
0.023.6PtpAffx.32885.1.A1_atAt5g63180hypothetical protein-7e-3At2g33530scpl46 (serine carboxypeptidase-like 46)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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