Co-expression analysis

Gene ID	GmaAffx.12926.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g68020: ATTPS6 (HF=1e-38)
Module size	14 genes
NF	0.35
%ile	63.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	93.2	0.94	GmaAffx.12926.1.A1_at	BQ298426	-	-	1e-38	At1g68020	ATTPS6	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.96	Gma.16773.1.A1_at	BE556649	-	-	2e-1	At1g19310	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.95	Gma.9505.1.S1_at	BI786624	-	-	8e-34	At4g24800	MA3 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.96	Gma.7381.1.S1_at	CD395082	-	-	3e-2	At3g10480	no apical meristem (NAM) family protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.96	Gma.4370.1.S1_at	BQ080781	-	-	4e-1	At3g03920	Gar1 RNA-binding region family protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.96	Gma.4370.1.S1_x_at	BQ080781	-	-	4e-1	At3g03920	Gar1 RNA-binding region family protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.96	Gma.3825.1.S1_at	AW351095	-	-	5e-29	At5g18110	NCBP (NOVEL CAP-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.96	Gma.7573.1.S1_at	BM309802	-	-	5e-1	At1g23980	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.96	Gma.1976.1.A1_at	BM519790	-	-	9e-1	At5g44565	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.97	Gma.16233.1.S1_at	BE659138	-	-	7e-7	At3g06670	binding	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.97	GmaAffx.73949.1.S1_at	BG362762	-	-	4e-42	At4g35800	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.97	Gma.8237.1.A1_at	AW309794	-	-	9e-1	At1g63030	ddf2 (DWARF AND DELAYED FLOWERING 2)	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.97	Gma.6393.2.S1_a_at	BM891503	-	-	6e-17	At5g53000	TAP46 (2A phosphatase associated protein of 46 kD)	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.97	Gma.3329.2.S1_at	BM521039	-	-	5e-1	At2g03130	ribosomal protein L12 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.5	99.3	GSM147935	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.4	98.6	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.2	98.6	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.8	97.9	GSM201107	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.7	97.8	GSM201103	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.7	97.8	GSM201102	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.7	97.8	GSM147934	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.6	97.7	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.6	97.7	GSM201119	Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.5	97.7	GSM201098	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.4	97.6	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.4	97.6	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.3	97.5	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.2	97.4	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.2	97.4	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.2	97.4	GSM201118	Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.1	97.3	GSM201117	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.1	97.3	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.1	97.3	GSM191075	Soybean_Cotyledon_EP1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.0	97.2	GSM191080	Soybean_Cotyledon_ES2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.9	97.1	GSM201116	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.9	97.1	GSM201108	Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.9	97.1	GSM191076	Soybean_Cotyledon_EP2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.8	97.0	GSM191086	Soybean_Cotyledon_HI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.8	97.0	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.7	96.8	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.7	96.8	GSM191083	Soybean_Cotyledon_EPD1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.7	96.8	GSM201123	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.7	96.8	GSM147947	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.6	96.7	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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