Co-expression analysis

Gene ID GmaAffx.12886.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g16470: PAB1 (PROTEASOME SUBUNIT PAB1) (HF=1e+0)
Module size 15 genes
NF 0.37
%ile 65.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5678.20.89GmaAffx.12886.1.A1_atBE820744--1e+0At1g16470PAB1 (PROTEASOME SUBUNIT PAB1)O.I.H.G.S.X.
0.5071.70.94Gma.7480.1.S1_atBU548002--1e+0At4g13955-O.I.H.G.S.X.
0.4665.50.90GmaAffx.2153.1.S1_atCD393042--5e+0At5g17950unknown proteinO.I.H.G.S.X.
0.4057.10.95Gma.1732.1.S1_atBM891256--3e-22At1g68120BPC3 (BASIC PENTACYSTEINE 3)O.I.H.G.S.X.
0.4057.10.97Gma.7774.1.S1_atCD401719--1e-26At3g105403-phosphoinositide-dependent protein kinase, putativeO.I.H.G.S.X.
0.3548.60.97Gma.15367.1.S1_atCD412241--7e-60At3g59910-O.I.H.G.S.X.
0.3447.20.92Gma.7605.1.A1_atBU549002--1e-27At3g58570DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.3346.10.95GmaAffx.66387.1.S1_atAW277358--1e+1At5g38720unknown proteinO.I.H.G.S.X.
0.3243.70.92Gma.5423.2.A1_x_atCF920419--3e-8At5g10730binding / catalytic/ coenzyme bindingO.I.H.G.S.X.
0.3142.20.94Gma.14081.1.A1_atCD415115--1e-3At2g41670GTP-binding family proteinO.I.H.G.S.X.
0.3040.40.95Gma.15536.1.A1_atBU545719--3e+0At3g12730myb family transcription factorO.I.H.G.S.X.
0.2839.00.96Gma.1913.1.S1_atBI970928--0At2g37620ACT1 (ACTIN 1)O.I.H.G.S.X.
0.2735.70.93Gma.721.1.A1_atBE658564--2e-10At1g45180zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2633.90.96Gma.17760.1.S1_atAW471993VHS and GAT domain protein-4e-2At1g20470auxin-responsive family proteinO.I.H.G.S.X.
0.2329.90.93Gma.5384.1.S1_s_atAW349270--7e-2At2g43110unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.399.8GSM308559Mature Soybean (Glycine max) pollen grains Replicate 2GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
22.899.8GSM308560Mature Soybean (Glycine max) pollen grains Replicate 3GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
19.499.7GSM308556Mature Soybean (Glycine max) pollen grains replicate 1GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
3.796.8GSM201104Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.796.8GSM201119Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.696.7GSM191079Soybean_Cotyledon_ES1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.696.7GSM201130Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.696.7GSM182036Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.596.6GSM191080Soybean_Cotyledon_ES2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.596.6GSM182041Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.296.0GSM182042Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.195.8GSM147933Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.195.8GSM147950Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.095.6GSM147954Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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