Co-expression analysis

Gene ID	GmaAffx.12540.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g33770: protein kinase family protein (HF=1e-6)
Module size	6 genes
NF	0.48
%ile	79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	0.98	GmaAffx.12540.1.S1_at	BE474761	-	-	1e-6	At1g33770	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.7924.3.S1_at	BI787925	-	-	2e-3	At4g24290	-	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.97	GmaAffx.17305.1.S1_at	BM524663	-	-	3e+0	At5g61650	CYCP4	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.7924.3.S1_a_at	BI787925	-	-	2e-3	At4g24290	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	GmaAffx.92784.1.S1_at	CF808509	-	-	3e-2	At5g66850	MAPKKK5	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.98	GmaAffx.62269.1.S1_at	BU766031	-	-	3e-1	At1g22280	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	97.0	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage