CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.11644.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g10950: 60S ribosomal protein L37a (RPL37aB) (HF=8e-1)

Module size 7 genes

NF 0.05

%ile 18.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 89.5 0.81 GmaAffx.11644.1.S1_at AW156827 - - 8e-1 At3g10950 60S ribosomal protein L37a (RPL37aB) O.I. H.G. S.X.
0.61 81.8 0.83 Gma.15431.1.S1_at BG508249 - - 7e-1 At1g34490 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related O.I. H.G. S.X.
0.57 78.8 0.81 Gma.4525.1.S1_at BI967718 - - 3e-1 At1g09560 GLP5 (GERMIN-LIKE PROTEIN 5) O.I. H.G. S.X.
0.44 63.3 0.84 GmaAffx.66424.1.S1_at AW306696 - - 3e-2 At3g50770 calmodulin-related protein, putative O.I. H.G. S.X.
0.33 46.1 0.86 GmaAffx.17452.1.S1_at AW458587 - - 2e-1 At3g12370 ribosomal protein L10 family protein O.I. H.G. S.X.
0.01 3.4 0.86 Gma.7470.1.A1_at CD413105 - - 4e-16 At2g31880 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.01 3.4 0.84 GmaAffx.26509.1.S1_at BI945671 NAC domain protein NAC6 - 1e+1 Atcg00640 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.3 99.9 GSM209598 resistant_48hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
22.9 99.8 GSM209599 susceptible_48hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.1 97.3 GSM170926 Rust Innoculated, biological rep1 GSE7108 Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
3.1 95.8 GSM245935 Leaf_Water Control_Rep 3_48 h After Treatment GSE9730 Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
3.1 95.8 GSM245934 Leaf_Water Control_Rep 2_48 h After Treatment GSE9730 Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.

Inter-species module comparison

A co-expression module including the grape gene, 1621937_at, orthologous to the query gene, GmaAffx.11644.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.54 75.7 1621937_at At3g10950 hypothetical protein LOC100245655 - 2e-1 At4g02810 unknown protein O.I. H.G. S.X.
0.89 95.5 1618561_at At3g10950 hypothetical protein LOC100246875 - 2e-5 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.89 95.5 1622012_at At3g10950 - - 2e-2 At1g62760 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.89 95.5 1621244_s_at At3g10950 hypothetical protein LOC100246875 - 2e-5 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.86 95.1 1617334_s_at At3g10950 - - 1e-9 At5g65660 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.84 94.8 1606845_at At3g10950 hypothetical protein LOC100257315 - 1e+0 At3g52510 - O.I. H.G. S.X.
0.82 93.9 1612288_at At3g10950 - - 3e-1 At4g09040 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.82 93.9 1606429_at At3g10950 hypothetical protein LOC100251832 - 2e-1 At4g12390 PME1 (PECTIN METHYLESTERASE INHIBITOR 1) O.I. H.G. S.X.
0.78 92.6 1616735_at At3g10950 hypothetical protein LOC100257315 - 1e+0 At5g50470 NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7) O.I. H.G. S.X.
0.64 84.7 1620319_s_at At3g10950 R2R3 Myb14 transcription factor - 9e-2 At4g11660 AT-HSFB2B O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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