Co-expression analysis

Gene ID GmaAffx.11644.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g10950: 60S ribosomal protein L37a (RPL37aB) (HF=8e-1)
Module size 7 genes
NF 0.05
%ile 18.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.50.81GmaAffx.11644.1.S1_atAW156827--8e-1At3g1095060S ribosomal protein L37a (RPL37aB)O.I.H.G.S.X.
0.6181.80.83Gma.15431.1.S1_atBG508249--7e-1At1g34490membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-relatedO.I.H.G.S.X.
0.5778.80.81Gma.4525.1.S1_atBI967718--3e-1At1g09560GLP5 (GERMIN-LIKE PROTEIN 5)O.I.H.G.S.X.
0.4463.30.84GmaAffx.66424.1.S1_atAW306696--3e-2At3g50770calmodulin-related protein, putativeO.I.H.G.S.X.
0.3346.10.86GmaAffx.17452.1.S1_atAW458587--2e-1At3g12370ribosomal protein L10 family proteinO.I.H.G.S.X.
0.013.40.86Gma.7470.1.A1_atCD413105--4e-16At2g31880leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.013.40.84GmaAffx.26509.1.S1_atBI945671NAC domain protein NAC6-1e+1Atcg00640-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.399.9GSM209598resistant_48hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
22.999.8GSM209599susceptible_48hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
4.197.3GSM170926Rust Innoculated, biological rep1GSE7108Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stageLink to GEO
3.195.8GSM245935Leaf_Water Control_Rep 3_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
3.195.8GSM245934Leaf_Water Control_Rep 2_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1621937_at, orthologous to the query gene, GmaAffx.11644.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5475.71621937_atAt3g10950hypothetical protein LOC100245655-2e-1At4g02810unknown proteinO.I.H.G.S.X.
0.8995.51618561_atAt3g10950hypothetical protein LOC100246875-2e-5At3g03980short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.8995.51622012_atAt3g10950--2e-2At1g62760invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.8995.51621244_s_atAt3g10950hypothetical protein LOC100246875-2e-5At3g03980short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.8695.11617334_s_atAt3g10950--1e-9At5g65660hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.8494.81606845_atAt3g10950hypothetical protein LOC100257315-1e+0At3g52510-O.I.H.G.S.X.
0.8293.91612288_atAt3g10950--3e-1At4g09040RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.8293.91606429_atAt3g10950hypothetical protein LOC100251832-2e-1At4g12390PME1 (PECTIN METHYLESTERASE INHIBITOR 1)O.I.H.G.S.X.
0.7892.61616735_atAt3g10950hypothetical protein LOC100257315-1e+0At5g50470NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)O.I.H.G.S.X.
0.6484.71620319_s_atAt3g10950R2R3 Myb14 transcription factor-9e-2At4g11660AT-HSFB2BO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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