Co-expression analysis

Gene ID	Gma.9850.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g27820: ribosomal protein L18 family protein (HF=5e-6)
Module size	23 genes
NF	0.45
%ile	75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.1	0.97	Gma.9850.1.S1_at	AW311448	-	-	5e-6	At5g27820	ribosomal protein L18 family protein	O.I.	H.G.	S.X.	Please select
0.65	83.8	0.99	Gma.6740.1.S1_x_at	CD397282	-	-	5e-83	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	O.I.	H.G.	S.X.	Please select
0.65	83.8	0.98	Gma.5665.1.S1_at	BQ627738	-	-	4e-84	At2g36170	ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	Gma.17644.1.S1_s_at	BU090070	-	-	3e-4	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.98	GmaAffx.92687.1.S1_s_at	CF808962	-	-	1e-28	At1g48830	40S ribosomal protein S7 (RPS7A)	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.98	Gma.10596.1.S1_at	CD399436	-	-	4e-44	At3g59540	60S ribosomal protein L38 (RPL38B)	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.98	Gma.16192.1.S1_at	BG507769	-	-	2e-58	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.6575.1.S1_at	CD401299	-	-	2e-15	At5g46430	60S ribosomal protein L32 (RPL32B)	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.98	GmaAffx.89925.1.S1_x_at	CF805650	40S ribosomal S4 protein	-	2e-20	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	Gma.17644.1.S1_at	BU090070	-	-	3e-4	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	GmaAffx.12982.1.S1_s_at	BI945113	ribosomal protein S13	-	2e-32	At3g60770	40S ribosomal protein S13 (RPS13A)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	GmaAffx.91708.1.S1_at	CF807433	-	-	6e-52	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	Gma.5354.1.S1_x_at	CD401290	-	-	1e-7	At4g29410	60S ribosomal protein L28 (RPL28C)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	GmaAffx.90801.1.S1_at	CF805999	-	-	3e-119	At5g08680	ATP synthase beta chain, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	Gma.5354.1.S1_at	CD401290	-	-	1e-7	At4g29410	60S ribosomal protein L28 (RPL28C)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	Gma.6740.1.S1_a_at	CD397282	-	-	5e-83	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	Gma.11225.1.S1_s_at	AI443347	-	-	1e-97	At1g14320	SAC52 (SUPPRESSOR OF ACAULIS 52)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	Gma.3019.1.S1_at	CD391304	-	-	4e-19	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	Gma.1449.1.S1_s_at	AY157740.1	nucleoside diphosphate kinase	-	5e-41	At4g09320	NDPK1	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	Gma.584.1.S1_at	CD402664	-	-	5e-47	At1g67430	60S ribosomal protein L17 (RPL17B)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	GmaAffx.89272.1.A1_s_at	CK606408	-	-	1e-34	At5g27850	60S ribosomal protein L18 (RPL18C)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.6263.1.S1_at	AW311303	-	-	2e-112	At1g79550	PGK (PHOSPHOGLYCERATE KINASE)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	Gma.11133.1.S1_s_at	CD396940	-	-	2e-28	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.5	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
5.7	98.4	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
5.6	98.3	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.2	97.4	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.9	97.1	GSM292243	56_C025.1B.SLB2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.5	96.6	GSM294048	97_2249.2F.R268L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.4	96.4	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.3	96.2	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.2	96.0	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
3.2	96.0	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.2	96.0	GSM258503	Soybean shoot apical meristem, 2 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.2	96.0	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
3.1	95.8	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.1	95.8	GSM293148	5_1147.1O.R093U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.0	95.6	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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