Co-expression analysis

Gene ID Gma.9641.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g24490: transcription factor (HF=1e+0)
Module size 8 genes
NF 0.14
%ile 34.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3954.50.96Gma.9641.1.A1_atCA936907--1e+0At3g24490transcription factorO.I.H.G.S.X.
0.5678.20.97Gma.2720.1.S1_atBQ742519--8e-1At3g59450calcium-binding EF hand family proteinO.I.H.G.S.X.
0.5374.20.96Gma.17112.1.S1_atAW396589--2e+0At5g02460Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.2532.60.97GmaAffx.2747.1.S1_atAI460733--3e+0At1g05260RCI3 (RARE COLD INDUCIBLE GENE 3)O.I.H.G.S.X.
0.2228.10.96Gma.8235.1.A1_atBU549558--1e+0At5g61920unknown proteinO.I.H.G.S.X.
0.0811.00.96GmaAffx.42189.1.S1_atBQ452503--3e+0At5g18636unknown proteinO.I.H.G.S.X.
0.069.00.97GmaAffx.15146.1.S1_atBU546178--9e-7At3g12570FYDO.I.H.G.S.X.
0.058.00.96Gma.7017.1.S1_a_atBU546669--6e+0At4g02730transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.899.1GSM308559Mature Soybean (Glycine max) pollen grains Replicate 2GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
8.399.1GSM308560Mature Soybean (Glycine max) pollen grains Replicate 3GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
6.998.8GSM308556Mature Soybean (Glycine max) pollen grains replicate 1GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
3.897.0GSM147935Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.897.0GSM191087Soybean_Cotyledon_II1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.696.7GSM191088Soybean_Cotyledon_II2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.396.2GSM184829Whole Seed at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.396.2GSM209585resistant_12hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.095.6GSM201119Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.095.6GSM184828Whole Seed at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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