Co-expression analysis

Gene ID	Gma.8705.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g65430: zinc finger protein-related (HF=1e-23)
Module size	7 genes
NF	0.50
%ile	80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	91.5	0.98	Gma.8705.1.S1_at	BQ742642	-	-	1e-23	At1g65430	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.2520.1.S1_at	AW570245	-	-	2e-7	At2g46500	phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	Gma.6902.1.S1_a_at	CD396278	-	-	1e-12	At5g01010	-	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	Gma.2660.1.S1_at	BE657176	-	-	9e-13	At1g69060	heat shock protein binding	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.8578.1.S1_at	BQ079840	-	-	4e-26	At3g60150	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	Gma.9738.1.S1_at	CA938669	-	-	3e-7	At4g20330	transcription initiation factor-related	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	Gma.17071.1.S1_at	BE822434	-	-	6e-2	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	95.8	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, Contig7084_at, orthologous to the query gene, Gma.8705.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig7084_at	At1g65430	-	-	2e-35	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	O.I.	H.G.	S.X.	Please select
0.59	75.8	Contig17078_at	At1g65430	-	-	4e-11	At3g02020	AK3 (ASPARTATE KINASE 3)	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig17178_at	At1g65430	-	-	2e-8	At2g24580	sarcosine oxidase family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig16572_at	At1g65430	-	-	5e+0	At5g03230	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	EBro08_SQ009_P22_at	At1g65430	-	-	3e+0	At5g19030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig25760_at	At1g65430	-	-	3e+0	At5g06190	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig4196_s_at	At1g65430	-	-	2e-1	At5g25010	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage