Co-expression analysis

Gene ID Gma.8705.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g65430: zinc finger protein-related (HF=1e-23)
Module size 7 genes
NF 0.50
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8091.50.98Gma.8705.1.S1_atBQ742642--1e-23At1g65430zinc finger protein-relatedO.I.H.G.S.X.
0.6786.10.98Gma.2520.1.S1_atAW570245--2e-7At2g46500phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family proteinO.I.H.G.S.X.
0.5374.20.98Gma.6902.1.S1_a_atCD396278--1e-12At5g01010-O.I.H.G.S.X.
0.4463.30.98Gma.2660.1.S1_atBE657176--9e-13At1g69060heat shock protein bindingO.I.H.G.S.X.
0.4057.10.98Gma.8578.1.S1_atBQ079840--4e-26At3g60150unknown proteinO.I.H.G.S.X.
0.3650.80.98Gma.9738.1.S1_atCA938669--3e-7At4g20330transcription initiation factor-relatedO.I.H.G.S.X.
0.2532.60.98Gma.17071.1.S1_atBE822434--6e-2At1g43890ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.195.8GSM29404796_3095.2F.R9F1L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g65430, orthologous to the query gene, Gma.8705.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.5873.8At1g65430842854zinc finger protein-relatedF:ubiquitin-protein ligase activity;P:unknown;C:intracellular;MOPFVO.I.H.G.S.X.
0.6882.2At5g23670832432LCB2Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.O.I.H.G.S.X.
0.6478.9At1g06890837199transporter-relatedF:unknown;P:unknown;C:Golgi apparatus, membrane;PMFOBAO.I.H.G.S.X.
0.6378.1At1g69330843265zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOO.I.H.G.S.X.
0.6075.7At1g49340841357ATPI4K ALPHAEncodes a phosphatidylinositol 4-kinase that is expressed in inflorescences and shoots.O.I.H.G.S.X.
0.6075.7At1g71410843482protein kinase family proteinF:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MOFPBVAO.I.H.G.S.X.
0.5773.8At1g15880838158GOS11 (golgi snare 11)Golgi SNARE 11 protein (GOS11)O.I.H.G.S.X.
0.5773.8At1g61770842474DNAJ heat shock N-terminal domain-containing proteinJ domain protein.O.I.H.G.S.X.
0.5673.0At1g08030837318unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.H.G.S.X.
0.5368.6At1g13900837949calcineurin-like phosphoesterase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity;P:biological_process unknown;C:chloroplast;PBMOFO.I.H.G.S.X.
0.5368.6At4g19110827649protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAO.I.H.G.S.X.
0.5267.4At4g26650828772RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MPOFBVAO.I.H.G.S.X.
0.5166.3At1g15490838119hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOPMFAO.I.H.G.S.X.
0.5065.3At1g33250840219fringe-related proteinF:transferase activity, transferring glycosyl groups;P:unknown;C:chloroplast, membrane;MPFOO.I.H.G.S.X.
0.4963.5At2g44090819015-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOVO.I.H.G.S.X.
0.4862.5At4g38260829983unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPAVO.I.H.G.S.X.
0.4761.2At1g19110838494inter-alpha-trypsin inhibitor heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;MBOPFAO.I.H.G.S.X.
0.4457.2At4g35790829733ATPLDDELTAEncodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death.O.I.H.G.S.X.
0.4253.9At5g32440833203-F:unknown;P:unknown;C:chloroplast;OPMFBO.I.H.G.S.X.
0.4253.9At5g22000832260RHF2A (RING-H2 GROUP F2A)encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.O.I.H.G.S.X.
0.4152.4At2g17800816290ARAC1A member of ROP GTPase family. Rac-like GTP-binding protein ARAC1/ATGP2. Encodes a geranylgeranylated GTP binding protein. Involved in the auxin-activated 26S proteasome-dependent Aux/IAA proteolysis pathway.O.I.H.G.S.X.
0.4152.4At5g64920836616CIP8 (COP1-INTERACTING PROTEIN 8)Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5.O.I.H.G.S.X.
0.3948.4At1g55520841999TBP2 (TATA BINDING PROTEIN 2)TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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