Co-expression analysis

Gene ID	Gma.8678.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g53730: SRF6 (STRUBBELIG-RECEPTOR FAMILY 6) (HF=9e-37)
Module size	6 genes
NF	0.17
%ile	40.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.2	0.93	Gma.8678.1.S1_at	BE823227	-	-	9e-37	At1g53730	SRF6 (STRUBBELIG-RECEPTOR FAMILY 6)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.92	Gma.7085.1.S1_at	BE820335	-	-	7e-13	At3g18000	XPL1 (XIPOTL 1)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.92	Gma.5666.2.S1_at	BE609637	-	-	5e-141	At1g75780	TUB1	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.94	Gma.6152.1.S1_at	BG650202	-	-	1e-13	At4g12420	SKU5	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.93	GmaAffx.42577.1.A1_at	BU549354	-	-	6e-24	At3g25500	AFH1 (FORMIN HOMOLOGY 1)	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.93	Gma.4904.1.S1_at	BM731809	-	-	2e-35	At5g10920	argininosuccinate lyase, putative / arginosuccinase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.9	GSM238034	Soybean-2601R-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.5	97.7	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.3	97.5	GSM201117	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.2	97.4	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.2	97.4	GSM238032	Soybean-2601R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.1	97.3	GSM191075	Soybean_Cotyledon_EP1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.0	97.2	GSM184826	Young trifoliate leaf, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.9	97.1	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.9	97.1	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.9	97.1	GSM201115	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.8	97.0	GSM238036	Soybean-Bayfield-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.8	97.0	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.7	96.8	GSM201116	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.7	96.8	GSM201129	Whole Seed at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.7	96.8	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.6	96.7	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.6	96.7	GSM191076	Soybean_Cotyledon_EP2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.5	96.6	GSM201114	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.5	96.6	GSM238030	Soybean-2601R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.5	96.6	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.5	96.6	GSM238059	Soybean-S03W4-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.4	96.4	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.4	96.4	GSM201100	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.3	96.2	GSM182047	Whole Seed at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.3	96.2	GSM184827	Young trifoliate leaf, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.3	96.2	GSM191092	Soybean_Cotyledon_SEED2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.3	96.2	GSM238058	Soybean-S03W4-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.2	96.0	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.2	96.0	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.2	96.0	GSM201111	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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