Co-expression analysis

Gene ID Gma.8643.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g09740: SYP71 (SYNTAXIN OF PLANTS 71) (HF=1e-9)
Module size 6 genes
NF 0.42
%ile 71.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5071.70.98Gma.8643.2.S1_atBG652817--1e-9At3g09740SYP71 (SYNTAXIN OF PLANTS 71)O.I.H.G.S.X.
0.5374.20.98GmaAffx.69670.1.S1_atBQ742118--7e-5At4g22670AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)O.I.H.G.S.X.
0.5374.20.98GmaAffx.91473.1.S1_atCF807198--3e-22At4g28860ckl4 (Casein Kinase I-like 4)O.I.H.G.S.X.
0.4463.30.98GmaAffx.40419.1.S1_atBF325410--1e-11At3g03570-O.I.H.G.S.X.
0.3243.70.98GmaAffx.90745.1.S1_s_atCF806470--4e+0At5g42235Expressed proteinO.I.H.G.S.X.
0.2532.60.98GmaAffx.81052.2.S1_atBM528722--6e-39At3g58500PP2A-3 (PROTEIN PHOSPHATASE 2A-3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.195.8GSM29324734_C066.1P.R9P2P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.095.6GSM29282582_C184.1K.R9K1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.095.6GSM29413286_3112.2G.R9G1P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os05g0553700, orthologous to the query gene, Gma.8643.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.9Os05g0553700At3g09740-Syntaxin 71 (AtSYP71)2e-19At3g09740SYP71 (SYNTAXIN OF PLANTS 71)O.I.H.G.S.X.
0.6787.2Os05g0311000At3g09740-Mu2 adaptin subunit (AP50) of AP2 domaincontaining protein3e-7At5g05010clathrin adaptor complexes medium subunit-relatedO.I.H.G.S.X.
0.3644.0Os05g0106600At3g09740-Non-muscle actin0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.2321.2Os12g0207300At3g09740-Clathrin coat assembly protein AP17 (Clathrin coatassociated protein AP17) (Plasma membrane adaptor AP-2 17kDa protein) (HA2 17 kDa subunit) (Clathrin assemblyprotein 2 small chain)9e-55At1g47830clathrin coat assembly protein, putativeO.I.H.G.S.X.
0.2219.4Os05g0461300At3g09740-Ras-related protein Rab-8A (Oncogene c-mel)4e-48At3g53610ATRAB8O.I.H.G.S.X.
0.127.2Os11g0162200At3g09740--3e-7At1g15120ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage