Co-expression analysis

Gene ID	Gma.8643.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g09740: SYP71 (SYNTAXIN OF PLANTS 71) (HF=1e-9)
Module size	6 genes
NF	0.42
%ile	71.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	71.7	0.98	Gma.8643.2.S1_at	BG652817	-	-	1e-9	At3g09740	SYP71 (SYNTAXIN OF PLANTS 71)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	GmaAffx.69670.1.S1_at	BQ742118	-	-	7e-5	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	GmaAffx.91473.1.S1_at	CF807198	-	-	3e-22	At4g28860	ckl4 (Casein Kinase I-like 4)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	GmaAffx.40419.1.S1_at	BF325410	-	-	1e-11	At3g03570	-	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	GmaAffx.90745.1.S1_s_at	CF806470	-	-	4e+0	At5g42235	Expressed protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	GmaAffx.81052.2.S1_at	BM528722	-	-	6e-39	At3g58500	PP2A-3 (PROTEIN PHOSPHATASE 2A-3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	95.8	GSM293247	34_C066.1P.R9P2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292825	82_C184.1K.R9K1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, Contig5046_at, orthologous to the query gene, Gma.8643.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	Contig5046_at	At3g09740	-	-	3e-6	At3g45280	SYP72 (SYNTAXIN OF PLANTS 72)	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig16423_at	At3g09740	-	-	2e+0	At3g02580	STE1 (STEROL 1)	O.I.	H.G.	S.X.	Please select
0.52	68.3	HA06i14r_s_at	At3g09740	-	-	8e-4	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	O.I.	H.G.	S.X.	Please select
0.52	68.3	Contig3335_at	At3g09740	-	-	3e-67	At5g59840	Ras-related GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	Contig3332_at	At3g09740	-	-	2e-1	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.52	68.3	Contig11576_at	At3g09740	-	-	4e-1	At3g58150	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig3334_at	At3g09740	-	-	2e-53	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig3337_at	At3g09740	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig18104_at	At3g09740	-	-	2e-2	At1g63057	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig3111_at	At3g09740	-	-	5e-1	At5g64667	IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig6860_at	At3g09740	-	-	8e-4	At5g66815	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig381_x_at	At3g09740	-	-	2e-2	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig18108_at	At3g09740	-	-	2e+0	At5g05990	mitochondrial glycoprotein family protein / MAM33 family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig26506_at	At3g09740	-	-	7e-2	At1g75720	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig7333_at	At3g09740	-	-	6e-2	At3g54360	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig8563_at	At3g09740	-	-	3e-2	At3g04990	-	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig22852_at	At3g09740	-	-	6e-1	At5g24250	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	rbaak4i15_s_at	At3g09740	-	-	2e-6	At5g08680	ATP synthase beta chain, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig1846_at	At3g09740	-	-	9e-29	At4g35090	CAT2 (CATALASE 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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