Co-expression analysis

Gene ID	Gma.8638.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g13260: unknown protein (HF=5e-22)
Module size	15 genes
NF	0.43
%ile	73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.8	0.93	Gma.8638.1.A1_at	CA783239	-	-	5e-22	At5g13260	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.95	Gma.9051.1.S1_at	BU081412	-	-	9e-2	At4g18180	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.94	Gma.5747.1.S1_at	BG510757	-	-	4e-40	At1g48410	AGO1 (ARGONAUTE 1)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.94	GmaAffx.22133.1.A1_at	BE821570	-	-	2e-1	At3g09770	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.95	Gma.7917.2.A1_a_at	BU551073	-	-	1e+0	Atcg01060	-	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.94	Gma.5944.1.S1_at	BQ610494	-	-	1e-15	At4g22140	DNA binding / protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.95	GmaAffx.16409.1.S1_at	AW317152	-	-	2e+0	At4g10115	SCRL20 (SCR-Like 20)	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.94	Gma.12193.1.A1_at	CD412873	-	-	3e+0	At3g12650	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.94	Gma.5093.1.S1_at	AF244518.1	plastid 3-keto-acyl-ACP synthase II-B /// beta-ketoacyl-ACP synthetase 2	-	6e-129	At1g74960	FAB1 (FATTY ACID BIOSYNTHESIS 1)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.96	GmaAffx.14100.1.S1_at	BI423789	-	-	8e-1	At3g06460	GNS1/SUR4 membrane family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.97	GmaAffx.13929.1.S1_at	BI701310	-	-	2e+0	At5g22290	anac089 (Arabidopsis NAC domain containing protein 89)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.96	Gma.11500.1.S1_at	BE058294	-	-	2e+0	At3g51760	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.94	GmaAffx.39874.1.S1_at	BE440937	-	-	4e+0	At3g57320	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.95	Gma.17464.2.S1_at	BG507766	-	-	8e-4	At3g56720	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.96	GmaAffx.66132.1.S1_at	BI471936	-	-	5e+0	At1g65390	ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.4	99.1	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.0	99.0	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.8	99.0	GSM147935	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.9	98.8	GSM201123	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.9	98.8	GSM201102	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.9	98.8	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.8	98.7	GSM201107	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.7	98.7	GSM201098	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.5	98.7	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.4	98.6	GSM191085	Soybean_Cotyledon_HI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
6.4	98.6	GSM191086	Soybean_Cotyledon_HI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
6.3	98.6	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
6.3	98.6	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.3	98.6	GSM201103	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.1	98.5	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.8	98.4	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.7	98.4	GSM182039	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.7	98.4	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.7	98.4	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.7	98.4	GSM191083	Soybean_Cotyledon_EPD1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.7	98.4	GSM201097	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.7	98.4	GSM201116	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.6	98.3	GSM201100	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.5	98.3	GSM201124	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.4	98.2	GSM201117	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.4	98.2	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.4	98.2	GSM182040	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.4	98.2	GSM191076	Soybean_Cotyledon_EP2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.4	98.2	GSM191075	Soybean_Cotyledon_EP1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.3	98.2	GSM147947	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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