Co-expression analysis

Gene ID	Gma.8407.1.S1_x_at
Gene name	ADP-ribosylation factor
Homology with Arabidopsis	Similar to At2g47170: ARF1A1C (HF=9e-120)
Module size	6 genes
NF	0.73
%ile	96.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	92.5	0.98	Gma.8407.1.S1_x_at	AW348317	ADP-ribosylation factor	-	9e-120	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.99	Gma.10802.1.S1_a_at	BI969275	Clone GMFP1 isoprenylated protein	-	4e-12	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.99	Gma.8407.1.S1_at	AW348317	ADP-ribosylation factor	-	9e-120	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.98	Gma.3568.2.S1_at	BM308236	-	-	3e-42	At2g44610	RAB6A	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.99	Gma.10261.1.S1_at	BG839311	-	-	2e-52	At3g27090	-	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.17595.1.S1_s_at	BI967850	ubiquitin-conjugation enzyme	-	6e-56	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	96.0	GSM293247	34_C066.1P.R9P2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292158	10_C010.1A.R9A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
3.1	95.8	GSM292162	15-1002.1A.R001P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.8775.1.A1_s_at, orthologous to the query gene, Gma.8407.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	PtpAffx.8775.1.A1_s_at	At2g47170	hypothetical protein	-	2e-133	At1g70490	ARFA1D	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.936.1.S1_s_at	At2g47170	hypothetical protein	-	2e-50	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.13016.1.S1_s_at	At2g47170	hypothetical protein	-	2e-46	At1g09330	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.14196.1.S1_s_at	At2g47170	hypothetical protein	-	4e-4	At1g72020	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.21710.1.S1_x_at	At2g47170	hypothetical protein	-	8e-120	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.2152.1.S1_s_at	At2g47170	hypothetical protein	-	5e-5	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	Ptp.746.1.A1_at	At2g47170	hypothetical protein	-	3e-2	At2g16595	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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