Co-expression analysis

Gene ID Gma.8407.1.S1_x_at
Gene name ADP-ribosylation factor
Homology with ArabidopsisSimilar to At2g47170: ARF1A1C (HF=9e-120)
Module size 6 genes
NF 0.73
%ile 96.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8392.50.98Gma.8407.1.S1_x_atAW348317ADP-ribosylation factor-9e-120At2g47170ARF1A1CO.I.H.G.S.X.
0.8091.50.99Gma.10802.1.S1_a_atBI969275Clone GMFP1 isoprenylated protein-4e-12At3g44110ATJ3O.I.H.G.S.X.
0.8091.50.99Gma.8407.1.S1_atAW348317ADP-ribosylation factor-9e-120At2g47170ARF1A1CO.I.H.G.S.X.
0.5778.80.98Gma.3568.2.S1_atBM308236--3e-42At2g44610RAB6AO.I.H.G.S.X.
0.5576.30.99Gma.10261.1.S1_atBG839311--2e-52At3g27090-O.I.H.G.S.X.
0.5071.70.98Gma.17595.1.S1_s_atBI967850ubiquitin-conjugation enzyme-6e-56At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.296.0GSM29324734_C066.1P.R9P2P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29215810_C010.1A.R9A2P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM17161915_W.F.M.5, Experimental replicate WGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistanceLink to GEO
3.195.8GSM29216215-1002.1A.R001P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig395_s_at, orthologous to the query gene, Gma.8407.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4458.9Contig395_s_atAt2g47170--8e-111At1g70490ARFA1DO.I.H.G.S.X.
0.4458.9Contig6309_atAt2g47170--6e-1At5g66815unknown proteinO.I.H.G.S.X.
0.3647.1Contig2665_s_atAt2g47170--6e-62At1g14400UBC1 (UBIQUITIN CARRIER PROTEIN 1)O.I.H.G.S.X.
0.2326.1Contig17937_atAt2g47170--6e+0At4g36110auxin-responsive protein, putativeO.I.H.G.S.X.
0.2021.1HVSMEm0008H21r2_atAt2g47170--4e+0At1g56670GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.1716.9Contig16931_atAt2g47170--2e+0At3g06050PRXIIF (PEROXIREDOXIN IIF)O.I.H.G.S.X.
0.086.5HV05G21u_atAt2g47170--1e+1At5g12110elongation factor 1B alpha-subunit 1 (eEF1Balpha1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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