CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.8407.1.S1_x_at

Gene name ADP-ribosylation factor
Homology with Arabidopsis Similar to At2g47170: ARF1A1C (HF=9e-120)

Module size 6 genes

NF 0.73

%ile 96.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 92.5 0.98 Gma.8407.1.S1_x_at AW348317 ADP-ribosylation factor - 9e-120 At2g47170 ARF1A1C O.I. H.G. S.X.
0.80 91.5 0.99 Gma.10802.1.S1_a_at BI969275 Clone GMFP1 isoprenylated protein - 4e-12 At3g44110 ATJ3 O.I. H.G. S.X.
0.80 91.5 0.99 Gma.8407.1.S1_at AW348317 ADP-ribosylation factor - 9e-120 At2g47170 ARF1A1C O.I. H.G. S.X.
0.57 78.8 0.98 Gma.3568.2.S1_at BM308236 - - 3e-42 At2g44610 RAB6A O.I. H.G. S.X.
0.55 76.3 0.99 Gma.10261.1.S1_at BG839311 - - 2e-52 At3g27090 - O.I. H.G. S.X.
0.50 71.7 0.98 Gma.17595.1.S1_s_at BI967850 ubiquitin-conjugation enzyme - 6e-56 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.2 96.0 GSM293247 34_C066.1P.R9P2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM292158 10_C010.1A.R9A2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM171619 15_W.F.M.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
3.1 95.8 GSM292162 15-1002.1A.R001P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g47170, orthologous to the query gene, Gma.8407.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.29 30.3 At2g47170 819330 ARF1A1C Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. O.I. H.G. S.X.
0.55 70.6 At3g08580 820005 AAC1 (ADP/ATP CARRIER 1) mitochondrial ADP/ATP carrier O.I. H.G. S.X.
0.46 59.8 At1g49140 841337 NADH-ubiquinone oxidoreductase-related F:unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;FPM O.I. H.G. S.X.
0.42 53.9 At4g11150 826716 TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis. O.I. H.G. S.X.
0.33 38.1 At2g33040 817866 ATP synthase gamma chain, mitochondrial (ATPC) F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:in 7 components;OBMFPA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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