Co-expression analysis

Gene ID Gma.8340.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g72390: unknown protein (HF=3e-3)
Module size 6 genes
NF 0.40
%ile 70.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8091.50.98Gma.8340.1.S1_atAW201258--3e-3At1g72390unknown proteinO.I.H.G.S.X.
0.6786.10.98Gma.13522.1.S1_atAW101034--8e-2At5g11040-O.I.H.G.S.X.
0.5778.80.98GmaAffx.55686.1.S1_atBI970602--7e-7At5g43560meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.5071.70.98GmaAffx.93627.1.S1_s_atCF809352--2e-44At5g18620CHR17 (CHROMATIN REMODELING FACTOR17)O.I.H.G.S.X.
0.2430.90.98Gma.5040.1.S1_atBI970582--1e-7At5g61140DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.2329.90.98Gma.8652.1.A1_atCD407809--3e-1At1g48160signal recognition particle 19 kDa protein, putative / SRP19, putativeO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.696.7GSM2931263_C038.1O.R9O1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29457141_3212.2L.R9L3P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29310520_C054.1O.R9O3P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.095.6GSM29237347_C104.1F.R9F3P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage