Co-expression analysis

Gene ID	Gma.8340.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g72390: unknown protein (HF=3e-3)
Module size	6 genes
NF	0.40
%ile	70.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	91.5	0.98	Gma.8340.1.S1_at	AW201258	-	-	3e-3	At1g72390	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.13522.1.S1_at	AW101034	-	-	8e-2	At5g11040	-	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.98	GmaAffx.55686.1.S1_at	BI970602	-	-	7e-7	At5g43560	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	GmaAffx.93627.1.S1_s_at	CF809352	-	-	2e-44	At5g18620	CHR17 (CHROMATIN REMODELING FACTOR17)	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.98	Gma.5040.1.S1_at	BI970582	-	-	1e-7	At5g61140	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	Gma.8652.1.A1_at	CD407809	-	-	3e-1	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.7	GSM293126	3_C038.1O.R9O1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294571	41_3212.2L.R9L3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293105	20_C054.1O.R9O3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292373	47_C104.1F.R9F3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.29672.1.S1_at, orthologous to the query gene, Gma.8340.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	TaAffx.29672.1.S1_at	At1g72390	-	-	2e+1	At3g23210	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	TaAffx.79975.1.S1_at	At1g72390	-	-	1e+0	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	O.I.	H.G.	S.X.	Please select
0.67	86.3	TaAffx.52079.1.S1_x_at	At1g72390	-	-	6e-2	At1g55080	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	TaAffx.52079.1.S1_at	At1g72390	-	-	6e-2	At1g55080	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.5258.1.S1_at	At1g72390	-	-	1e+0	At1g51230	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.13191.3.S1_x_at	At1g72390	-	-	3e+0	At4g05230	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.19945.1.S1_at	At1g72390	-	-	2e-1	At1g61920	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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