Co-expression analysis

Gene ID	Gma.8340.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g72390: unknown protein (HF=3e-3)
Module size	6 genes
NF	0.40
%ile	70.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	91.5	0.98	Gma.8340.1.S1_at	AW201258	-	-	3e-3	At1g72390	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.13522.1.S1_at	AW101034	-	-	8e-2	At5g11040	-	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.98	GmaAffx.55686.1.S1_at	BI970602	-	-	7e-7	At5g43560	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	GmaAffx.93627.1.S1_s_at	CF809352	-	-	2e-44	At5g18620	CHR17 (CHROMATIN REMODELING FACTOR17)	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.98	Gma.5040.1.S1_at	BI970582	-	-	1e-7	At5g61140	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	Gma.8652.1.A1_at	CD407809	-	-	3e-1	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.7	GSM293126	3_C038.1O.R9O1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294571	41_3212.2L.R9L3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293105	20_C054.1O.R9O3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292373	47_C104.1F.R9F3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, Contig13671_at, orthologous to the query gene, Gma.8340.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	80.9	Contig13671_at	At1g72390	-	-	1e-14	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig9343_at	At1g72390	-	-	9e-5	At2g22670	IAA8	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig23607_at	At1g72390	-	-	8e-15	At4g26470	calcium ion binding	O.I.	H.G.	S.X.	Please select
0.32	40.3	rbaal34e03_at	At1g72390	-	-	7e+0	At5g09250	KIWI	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig9655_s_at	At1g72390	-	-	4e+0	At4g22520	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	HZ40F21r_at	At1g72390	-	-	5e-32	Atcg00490	-	O.I.	H.G.	S.X.	Please select
0.24	27.2	HVSMEg0006C07r2_at	At1g72390	-	-	3e-4	At1g08380	PSAO (photosystem I subunit O)	O.I.	H.G.	S.X.	Please select
0.22	24.2	HV12A16u_s_at	At1g72390	-	-	1e+1	At5g63880	VPS20.1	O.I.	H.G.	S.X.	Please select
0.18	18.2	S0001000056H16F1_at	At1g72390	-	-	9e-1	At3g28500	60S acidic ribosomal protein P2 (RPP2C)	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig9512_at	At1g72390	-	-	4e-5	At1g29790	-	O.I.	H.G.	S.X.	Please select
0.13	11.6	HZ37P10r_at	At1g72390	-	-	3e-1	At4g33750	-	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig3792_at	At1g72390	-	-	2e-2	At2g20820	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	HW06A08u_at	At1g72390	-	-	2e-10	At3g29360	UDP-glucose 6-dehydrogenase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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