CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.8340.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g72390: unknown protein (HF=3e-3)

Module size 6 genes

NF 0.40

%ile 70.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 91.5 0.98 Gma.8340.1.S1_at AW201258 - - 3e-3 At1g72390 unknown protein O.I. H.G. S.X.
0.67 86.1 0.98 Gma.13522.1.S1_at AW101034 - - 8e-2 At5g11040 - O.I. H.G. S.X.
0.57 78.8 0.98 GmaAffx.55686.1.S1_at BI970602 - - 7e-7 At5g43560 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.
0.50 71.7 0.98 GmaAffx.93627.1.S1_s_at CF809352 - - 2e-44 At5g18620 CHR17 (CHROMATIN REMODELING FACTOR17) O.I. H.G. S.X.
0.24 30.9 0.98 Gma.5040.1.S1_at BI970582 - - 1e-7 At5g61140 DEAD box RNA helicase, putative O.I. H.G. S.X.
0.23 29.9 0.98 Gma.8652.1.A1_at CD407809 - - 3e-1 At1g48160 signal recognition particle 19 kDa protein, putative / SRP19, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.6 96.7 GSM293126 3_C038.1O.R9O1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM294571 41_3212.2L.R9L3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293105 20_C054.1O.R9O3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM292373 47_C104.1F.R9F3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g72390, orthologous to the query gene, Gma.8340.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g72390 843571 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. H.G. S.X.
0.80 89.8 At2g30800 817631 HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) Has RNA or DNA helicase activity and expressed specifically in tapetum and vascular tissue. First identified member of a new group of the mle helicase group of the DEAH family. O.I. H.G. S.X.
0.63 78.1 At3g17450 821009 hAT dimerisation domain-containing protein F:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMVFB O.I. H.G. S.X.
0.55 70.6 At1g24706 839081 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. H.G. S.X.
0.53 68.6 At3g12380 820416 ATARP5 (ACTIN-RELATED PROTEIN 5) Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP gene family. O.I. H.G. S.X.
0.53 68.6 At4g10070 826598 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVA O.I. H.G. S.X.
0.50 65.3 At3g23900 821973 RNA recognition motif (RRM)-containing protein F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.48 62.5 At2g46020 819210 transcription regulatory protein SNF2, putative Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D. O.I. H.G. S.X.
0.46 59.8 At5g65180 836642 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV O.I. H.G. S.X.
0.42 53.9 At4g31200 829247 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein F:RNA binding;P:RNA processing;C:cellular_component unknown;MPFOBVA O.I. H.G. S.X.
0.33 38.1 At2g35330 818100 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPAV O.I. H.G. S.X.
0.32 35.7 At1g06070 837116 bZIP transcription factor, putative (bZIP69) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;OMFPBVA O.I. H.G. S.X.
0.15 7.8 At2g32730 817833 26S proteasome regulatory subunit, putative F:enzyme regulator activity, binding;P:ubiquitin-dependent protein catabolic process;C:cytosol, proteasome regulatory particle, base subcomplex;MFOPBA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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