Co-expression analysis

Gene ID	Gma.8218.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g61880: CYP78A9 (CYTOCHROME P450 78A9) (HF=3e-11)
Module size	16 genes
NF	0.81
%ile	98.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.2	0.85	Gma.8218.1.S1_at	BM523279	-	-	3e-11	At3g61880	CYP78A9 (CYTOCHROME P450 78A9)	O.I.	H.G.	S.X.	Please select
0.94	99.2	0.90	GmaAffx.87089.1.S1_at	BM092057	-	-	7e-2	At5g23810	AAP7	O.I.	H.G.	S.X.	Please select
0.90	93.7	0.87	GmaAffx.10773.1.S1_at	BU926045	-	-	8e-5	At5g66800	unknown protein	O.I.	H.G.	S.X.	Please select
0.88	93.4	0.85	GmaAffx.43208.1.A1_at	CD412962	-	-	2e-1	At3g24050	GATA transcription factor 1 (GATA-1)	O.I.	H.G.	S.X.	Please select
0.85	92.8	0.85	Gma.15322.1.S1_at	BG044778	-	-	3e+0	At3g50500	SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2)	O.I.	H.G.	S.X.	Please select
0.85	92.8	0.88	GmaAffx.21782.1.A1_at	AW598187	-	-	4e+0	At5g24316	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.82	91.9	0.84	GmaAffx.6553.1.S1_at	CD399622	-	-	1e+0	At4g25410	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.81	91.7	0.85	GmaAffx.87352.1.S1_at	BM524893	-	-	9e-1	At4g16740	ATTPS03	O.I.	H.G.	S.X.	Please select
0.81	91.7	0.83	GmaAffx.69290.1.S1_at	BU084857	-	-	3e+0	At5g47190	ribosomal protein L19 family protein	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.85	Gma.5205.2.S1_at	BG237396	-	-	2e+0	At5g67460	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.79	90.8	0.84	GmaAffx.10755.1.S1_at	BU927084	-	-	8e-1	At2g02500	ISPD	O.I.	H.G.	S.X.	Please select
0.78	90.6	0.81	GmaAffx.37152.1.S1_at	BM307869	-	-	3e+0	At4g10845	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.90	Gma.7646.2.S1_at	BU965216	-	-	4e-9	At5g51560	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.68	86.4	0.85	GmaAffx.39719.1.S1_at	BG509204	-	-	9e-2	At5g61660	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.85	GmaAffx.71745.1.S1_at	BE330199	-	-	2e-33	At4g04890	PDF2 (PROTODERMAL FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.87	GmaAffx.77211.1.S1_at	CD407284	-	-	5e-3	At1g53160	SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.1	99.7	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
16.6	99.6	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
16.4	99.6	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
16.3	99.6	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
15.4	99.6	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
14.9	99.6	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
13.9	99.6	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
12.7	99.5	GSM258505	Soybean shoot apical meristem, 6 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
12.7	99.5	GSM258503	Soybean shoot apical meristem, 2 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
12.2	99.5	GSM258500	Soybean shoot apical meristem, 6 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
11.6	99.4	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
10.7	99.4	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
9.2	99.2	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
9.0	99.2	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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