Co-expression analysis

Gene ID	Gma.8062.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g21630: transport protein, putative (HF=1e-7)
Module size	10 genes
NF	0.44
%ile	74.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	91.9	0.98	Gma.8062.1.A1_at	BI971176	-	-	1e-7	At2g21630	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.98	Gma.16112.1.S1_at	BI967596	-	-	2e-13	At2g32700	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	GmaAffx.43038.1.S1_at	BI969804	-	-	2e+0	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.3861.1.S1_at	CD406972	-	-	3e-4	At1g75850	VPS35B (VPS35 HOMOLOG B)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.10825.1.S1_at	CD407330	-	-	1e-3	At3g01435	Expressed protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	Gma.2835.1.S1_at	BI969866	-	-	4e-40	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	Gma.4412.1.S1_x_at	L28002.1	TATA-box binding protein	-	4e-51	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	GmaAffx.5376.10.S1_s_at	BU082924	-	-	2e-10	At2g18600	RUB1-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	Gma.3626.1.S1_at	BE800416	-	-	5e-38	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.98	Gma.933.1.S1_at	CD401061	-	-	1e-25	At5g54750	transport protein particle (TRAPP) component Bet3, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	97.2	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.5	96.6	GSM191092	Soybean_Cotyledon_SEED2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.5	96.6	GSM184828	Whole Seed at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.4	96.4	GSM191091	Soybean_Cotyledon_SEED1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.3	96.2	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.2	96.0	GSM184829	Whole Seed at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.2	96.0	GSM201117	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.0	95.6	GSM182047	Whole Seed at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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