Co-expression analysis

Gene ID	Gma.7945.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g16040: regulator of chromosome condensation (RCC1) family protein (HF=2e-36)
Module size	28 genes
NF	0.47
%ile	77.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	93.0	0.98	Gma.7945.1.S1_at	BU551250	-	-	2e-36	At5g16040	regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.	Please select
0.74	89.2	0.98	Gma.9584.1.A1_s_at	BU544192	-	-	2e-5	At3g52640	nicastrin-related	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.98	Gma.7581.1.S1_at	BI969748	-	-	1e-2	At5g13300	SFC (SCARFACE)	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.98	Gma.7026.2.S1_a_at	BG363077	-	-	1e-13	At1g28320	DEG15	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.98	Gma.1648.2.A1_a_at	CD404308	-	-	1e-4	At1g10820	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.98	Gma.7365.2.A1_a_at	BE823623	-	-	5e-2	At5g46750	AGD9 (ARF-GAP DOMAIN 9)	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.98	Gma.8673.1.S1_at	BE821944	-	-	3e-114	At1g51720	glutamate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.98	Gma.8059.1.S1_at	AW310669	-	-	2e+0	At4g40050	signal transducer	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.98	Gma.16637.1.A1_at	BE657305	-	-	2e-6	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.98	GmaAffx.66034.1.S1_at	AW351123	-	-	3e-4	At5g11030	ALF4 (ABERRANT LATERAL ROOT FORMATION 4)	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.98	Gma.13242.1.S1_at	CD396483	NAC domain protein	-	1e-5	At5g64060	anac103 (Arabidopsis NAC domain containing protein 103)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.2802.1.S1_at	CD396311	-	-	2e-29	At3g06810	IBR3 (IBA-RESPONSE 3)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	GmaAffx.51562.1.S1_at	BE822242	-	-	4e-1	At5g67390	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.98	Gma.1806.1.S1_at	BI971557	-	-	5e-26	At2g23980	ATCNGC6	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.98	Gma.8167.1.S1_at	BI945308	-	-	5e+0	At4g17160	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A)	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.98	Gma.3754.1.S1_x_at	BI426229	-	-	9e-2	At3g18430	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	Gma.13802.1.S1_at	CD403134	-	-	2e+0	At1g27695	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	Gma.867.1.S1_at	AI442971	-	-	4e-27	At1g01160	SSXT protein-related / transcription co-activator-related	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.98	Gma.13522.1.S1_at	AW101034	-	-	8e-2	At5g11040	-	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.98	GmaAffx.46850.1.S1_at	AW164691	-	-	5e+0	At3g53070	beta-galactosidase-related	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.11201.3.S1_s_at	BG239638	-	-	5e-12	At4g36760	ATAPP1	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	Gma.3926.1.S1_at	BE801733	-	-	2e-38	At1g04080	PRP39	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	Gma.8135.1.S1_at	BE658039	GT-1	-	3e-36	At1g13450	DNA binding protein GT-1	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	GmaAffx.661.1.S1_at	BI969786	-	-	2e+0	At1g67080	ABA4 (abscisic acid (ABA)-deficient 4)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	Gma.10781.1.S1_a_at	AW101008	-	-	7e-29	At2g38630	-	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	GmaAffx.3678.1.S1_at	BE806981	-	-	6e+0	At5g46570	BSK2 (BR-SIGNALING KINASE 2)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	GmaAffx.81094.1.S1_at	BG725380	-	-	8e-8	At4g33060	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	Gma.3025.1.S1_at	CA783326	-	-	9e-47	At5g47540	binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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