Co-expression analysis

Gene ID	Gma.7864.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g47320: RPS19 (RIBOSOMAL PROTEIN S19) (HF=1e+0)
Module size	8 genes
NF	0.23
%ile	47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	65.5	0.94	Gma.7864.1.S1_a_at	BQ611662	-	-	1e+0	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.96	GmaAffx.43786.2.S1_at	BU080930	-	-	4e-12	At2g17820	ATHK1 (histidine kinase 1)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.96	Gma.6813.1.A1_at	AW308988	-	-	5e-3	At3g23430	PHO1 (phosphate 1)	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.96	Gma.9511.1.S1_at	CA850830	-	-	8e-2	At5g64816	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.95	Gma.3801.1.S1_at	BI497593	-	-	4e-15	At2g33770	PHO2 (PHOSPHATE 2)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.96	GmaAffx.84209.1.S1_at	BQ610588	-	-	1e-16	At2g17820	ATHK1 (histidine kinase 1)	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.94	Gma.8824.1.A1_at	BU765628	-	-	3e+0	At1g24577	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.95	GmaAffx.70659.1.A1_at	AI495240	-	-	6e-1	At1g19540	isoflavone reductase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	96.6	GSM292377	50_1228.1F.R139P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292533	47_1288.1H.R182P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293790	34_2150.2D.R295P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the grape gene, 1622524_at, orthologous to the query gene, Gma.7864.1.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	1622524_at	At5g47320	hypothetical protein LOC100254356	-	4e-9	At2g24830	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1611784_at	At5g47320	hypothetical protein LOC100256712	-	2e-37	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	1621533_at	At5g47320	hypothetical protein LOC100248579	-	5e-45	At4g01810	protein transport protein-related	O.I.	H.G.	S.X.	Please select
0.58	79.8	1614829_at	At5g47320	hypothetical protein LOC100265775	-	3e-32	At4g35360	pantothenate kinase family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1606508_at	At5g47320	hypothetical protein LOC100241508	-	5e-7	At1g23900	GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1615384_at	At5g47320	hypothetical protein LOC100254141	-	7e-34	At5g08160	ATPK3	O.I.	H.G.	S.X.	Please select
0.34	46.8	1614249_at	At5g47320	similar to AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding	-	5e-85	At4g28470	RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B)	O.I.	H.G.	S.X.	Please select
0.32	43.1	1611182_at	At5g47320	hypothetical protein LOC100267624	-	2e-20	At3g03930	protein kinase-related	O.I.	H.G.	S.X.	Please select
0.26	32.0	1613683_at	At5g47320	hypothetical protein LOC100255739	-	7e-15	At1g47560	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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