Co-expression analysis

Gene ID	Gma.7864.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g47320: RPS19 (RIBOSOMAL PROTEIN S19) (HF=1e+0)
Module size	8 genes
NF	0.23
%ile	47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	65.5	0.94	Gma.7864.1.S1_a_at	BQ611662	-	-	1e+0	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.96	GmaAffx.43786.2.S1_at	BU080930	-	-	4e-12	At2g17820	ATHK1 (histidine kinase 1)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.96	Gma.6813.1.A1_at	AW308988	-	-	5e-3	At3g23430	PHO1 (phosphate 1)	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.96	Gma.9511.1.S1_at	CA850830	-	-	8e-2	At5g64816	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.95	Gma.3801.1.S1_at	BI497593	-	-	4e-15	At2g33770	PHO2 (PHOSPHATE 2)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.96	GmaAffx.84209.1.S1_at	BQ610588	-	-	1e-16	At2g17820	ATHK1 (histidine kinase 1)	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.94	Gma.8824.1.A1_at	BU765628	-	-	3e+0	At1g24577	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.95	GmaAffx.70659.1.A1_at	AI495240	-	-	6e-1	At1g19540	isoflavone reductase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	96.6	GSM292377	50_1228.1F.R139P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292533	47_1288.1H.R182P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293790	34_2150.2D.R295P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.207591.1.S1_x_at, orthologous to the query gene, Gma.7864.1.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.207591.1.S1_x_at	At5g47320	hypothetical protein	-	6e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.207593.1.S1_x_at	At5g47320	hypothetical protein	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	PtpAffx.19128.1.S1_at	At5g47320	hypothetical protein	-	3e+0	At5g48420	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.207593.1.S1_at	At5g47320	hypothetical protein	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.215318.1.S1_s_at	At5g47320	hypothetical protein	-	1e+0	At5g61660	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.210354.1.S1_at	At5g47320	hypothetical protein	-	1e-5	At4g27590	copper-binding protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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