Co-expression analysis

Gene ID	Gma.7774.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g10540: 3-phosphoinositide-dependent protein kinase, putative (HF=1e-26)
Module size	6 genes
NF	0.81
%ile	98.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	Gma.7774.1.S1_at	CD401719	-	-	1e-26	At3g10540	3-phosphoinositide-dependent protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.97	Gma.1324.1.S1_at	BE658235	-	-	1e-131	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.98	Gma.15367.1.S1_at	CD412241	-	-	7e-60	At3g59910	-	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.97	Gma.1913.1.S1_at	BI970928	-	-	0	At2g37620	ACT1 (ACTIN 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.2135.1.S1_a_at	BE660424	-	-	7e-1	At3g26400	EIF4B1	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	Gma.17760.1.S1_at	AW471993	VHS and GAT domain protein	-	4e-2	At1g20470	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
29.0	99.8	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
28.3	99.8	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
26.8	99.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the maize gene, Zm.16697.1.A1_at, orthologous to the query gene, Gma.7774.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	Zm.16697.1.A1_at	At3g10540	-	-	1e-12	At3g10540	3-phosphoinositide-dependent protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.11191.1.A1_at	At3g10540	-	-	6e-7	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.6398.1.A1_at	At3g10540	transposon protein Mutator sub-class	-	3e+0	At2g43660	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.17555.1.S1_at	At3g10540	D-tyrosyl-tRNA	-	1e-4	At4g18460	D-Tyr-tRNA(Tyr) deacylase family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.157.1.S1_at	At3g10540	catalase2	-	3e-22	At4g35090	CAT2 (CATALASE 2)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.7793.1.A1_at	At3g10540	-	-	1e+0	At1g30890	integral membrane HRF1 family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.4491.1.A1_at	At3g10540	arginine N-methyltransferase 2	-	2e+0	At2g44790	UCC2 (UCLACYANIN 2)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.4464.1.A1_at	At3g10540	TRANSPARENT TESTA 1 protein	-	2e+0	At1g34370	STOP1 (sensitive to proton rhizotoxicity 1)	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.16861.2.S1_at	At3g10540	L-ascorbate oxidase	-	7e-4	At1g55570	sks12 (SKU5 Similar 12)	O.I.	H.G.	S.X.	Please select
0.15	8.6	Zm.12000.1.A1_at	At3g10540	-	-	1e+1	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	O.I.	H.G.	S.X.	Please select
0.12	5.9	Zm.5810.1.A1_at	At3g10540	pop3 peptide	-	5e-4	At3g17210	HS1 (HEAT STABLE PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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