Co-expression analysis

Gene ID	Gma.7774.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g10540: 3-phosphoinositide-dependent protein kinase, putative (HF=1e-26)
Module size	6 genes
NF	0.81
%ile	98.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	Gma.7774.1.S1_at	CD401719	-	-	1e-26	At3g10540	3-phosphoinositide-dependent protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.97	Gma.1324.1.S1_at	BE658235	-	-	1e-131	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.98	Gma.15367.1.S1_at	CD412241	-	-	7e-60	At3g59910	-	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.97	Gma.1913.1.S1_at	BI970928	-	-	0	At2g37620	ACT1 (ACTIN 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.2135.1.S1_a_at	BE660424	-	-	7e-1	At3g26400	EIF4B1	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	Gma.17760.1.S1_at	AW471993	VHS and GAT domain protein	-	4e-2	At1g20470	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
29.0	99.8	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
28.3	99.8	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
26.8	99.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.90515.1.S1_s_at, orthologous to the query gene, Gma.7774.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	94.4	TaAffx.90515.1.S1_s_at	At3g10540	-	-	3e-10	At3g10540	3-phosphoinositide-dependent protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.20453.1.S1_at	At3g10540	-	-	3e-2	At4g39745	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.10983.1.S1_a_at	At3g10540	-	-	3e+0	At3g53530	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.8654.1.A1_at	At3g10540	-	-	5e+0	At3g43720	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.7489.1.S1_at	At3g10540	-	-	6e-1	At5g23820	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	Ta.8245.3.S1_at	At3g10540	-	-	1e+0	At2g32360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	Ta.13189.1.S1_at	At3g10540	MBD2	-	2e-4	At5g35330	MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.21374.1.S1_x_at	At3g10540	-	-	5e-38	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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