CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.7774.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g10540: 3-phosphoinositide-dependent protein kinase, putative (HF=1e-26)

Module size 6 genes

NF 0.81

%ile 98.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.97 Gma.7774.1.S1_at CD401719 - - 1e-26 At3g10540 3-phosphoinositide-dependent protein kinase, putative O.I. H.G. S.X.
0.80 91.5 0.97 Gma.1324.1.S1_at BE658235 - - 1e-131 At4g35950 ARAC6 (ARABIDOPSIS RAC-LIKE 6) O.I. H.G. S.X.
0.80 91.5 0.98 Gma.15367.1.S1_at CD412241 - - 7e-60 At3g59910 - O.I. H.G. S.X.
0.73 88.9 0.97 Gma.1913.1.S1_at BI970928 - - 0 At2g37620 ACT1 (ACTIN 1) O.I. H.G. S.X.
0.67 86.1 0.98 Gma.2135.1.S1_a_at BE660424 - - 7e-1 At3g26400 EIF4B1 O.I. H.G. S.X.
0.44 63.3 0.97 Gma.17760.1.S1_at AW471993 VHS and GAT domain protein - 4e-2 At1g20470 auxin-responsive family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.6	0.97	Gma.7774.1.S1_at	CD401719	-	-	1e-26	At3g10540	3-phosphoinositide-dependent protein kinase, putative	O.I.	H.G.	S.X.
0.80	91.5	0.97	Gma.1324.1.S1_at	BE658235	-	-	1e-131	At4g35950	ARAC6 (ARABIDOPSIS RAC-LIKE 6)	O.I.	H.G.	S.X.
0.80	91.5	0.98	Gma.15367.1.S1_at	CD412241	-	-	7e-60	At3g59910	-	O.I.	H.G.	S.X.
0.73	88.9	0.97	Gma.1913.1.S1_at	BI970928	-	-	0	At2g37620	ACT1 (ACTIN 1)	O.I.	H.G.	S.X.
0.67	86.1	0.98	Gma.2135.1.S1_a_at	BE660424	-	-	7e-1	At3g26400	EIF4B1	O.I.	H.G.	S.X.
0.44	63.3	0.97	Gma.17760.1.S1_at	AW471993	VHS and GAT domain protein	-	4e-2	At1g20470	auxin-responsive family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.0 99.8 GSM308559 Mature Soybean (Glycine max) pollen grains Replicate 2 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
28.3 99.8 GSM308560 Mature Soybean (Glycine max) pollen grains Replicate 3 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
26.8 99.8 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
29.0	99.8	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
28.3	99.8	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
26.8	99.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the rice gene, Os01g0872800, orthologous to the query gene, Gma.7774.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.81 94.8 Os01g0872800 At3g10540 - 3-phosphoinositide-dependent protein kinase-1(Fragment) 2e-17 At3g10540 3-phosphoinositide-dependent protein kinase, putative O.I. H.G. S.X.
0.50 68.0 Os10g0115600 At3g10540 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-9 At3g50670 U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) O.I. H.G. S.X.
0.45 58.8 Os01g0184900 At3g10540 - SSRP1 protein 9e-11 At3g28730 ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) O.I. H.G. S.X.
0.41 52.4 Os05g0506300 At3g10540 - Conserved hypothetical protein 4e-2 At4g25620 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.40 51.1 Os06g0558700 At3g10540 - Poly(A) polymerase, RNA-binding region domaincontaining protein 6e-8 At2g25850 nucleotidyltransferase family protein O.I. H.G. S.X.
0.39 48.3 Os03g0254700 At3g10540 - CTLH, C-terminal to LisH motif domain containingprotein 2e-40 At1g15750 TPL (TOPLESS) O.I. H.G. S.X.
0.39 48.3 Os07g0583700 At3g10540 - WRKY transcription factor 34 1e-21 At4g26640 WRKY20 O.I. H.G. S.X.
0.37 45.0 Os03g0239400 At3g10540 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 2e-2 At1g32150 bZIP transcription factor family protein O.I. H.G. S.X.
0.36 44.0 Os02g0827300 At3g10540 - Protein of unknown function DUF382 domaincontaining protein 7e-36 At4g21660 proline-rich spliceosome-associated (PSP) family protein O.I. H.G. S.X.
0.35 41.7 Os07g0138100 At3g10540 - Pleckstrin-like domain containing protein 6e-5 At2g30880 pleckstrin homology (PH) domain-containing protein O.I. H.G. S.X.
0.34 40.0 Os01g0744300 At3g10540 - Casein kinase-like protein 4e-15 At2g25760 protein kinase family protein O.I. H.G. S.X.
0.32 36.3 Os05g0207900 At3g10540 - Peptidase C48, SUMO/Sentrin/Ubl1 family protein 4e-10 At1g09730 Ulp1 protease family protein O.I. H.G. S.X.
0.32 36.3 Os10g0464100 At3g10540 - WD40-like domain containing protein 2e-8 At2g20330 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.32 36.3 Os02g0709900 At3g10540 - Hypothetical protein 3e-2 At1g13220 LINC2 (LITTLE NUCLEI2) O.I. H.G. S.X.
0.31 34.5 Os02g0781800 At3g10540 - WD40-like domain containing protein 6e-10 At3g54190 - O.I. H.G. S.X.
0.30 32.7 Os07g0495900 At3g10540 - Regulator of nonsense transcripts 1 homolog 1e-6 At5g47010 LBA1 (LOW-LEVEL BETA-AMYLASE 1) O.I. H.G. S.X.
0.30 32.7 Os02g0832700 At3g10540 - Cation efflux protein family protein 2e-16 At3g12100 cation efflux family protein / metal tolerance protein, putative O.I. H.G. S.X.
0.30 32.7 Os01g0214300 At3g10540 - Hypothetical protein 3e-4 At1g17790 DNA-binding bromodomain-containing protein O.I. H.G. S.X.
0.28 31.1 Os04g0440100 At3g10540 - Nonsense-mediated decay UPF3 domain containingprotein 2e-9 At1g33980 Smg-4/UPF3 family protein O.I. H.G. S.X.
0.27 27.5 Os03g0165600 At3g10540 - Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein 3e-1 At3g47890 ubiquitin thiolesterase/ zinc ion binding O.I. H.G. S.X.
0.27 27.5 Os03g0750800 At3g10540 - Transcriptional adaptor ADA2b (AT4g16420/dl4235c) 9e-11 At4g16420 ADA2B (HOMOLOG OF YEAST ADA2 2B) O.I. H.G. S.X.
0.27 27.5 Os02g0162600 At3g10540 - Conserved hypothetical protein 2e+0 At5g52160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.26 25.6 Os08g0176800 At3g10540 - contains InterPro domain(s): IPR001680, IPR011046 6e-45 At1g80670 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.26 25.6 Os01g0813500 At3g10540 - Vacuolar protein sorting 36 family protein 4e-3 At5g04920 vacuolar protein sorting 36 family protein / VPS36 family protein O.I. H.G. S.X.
0.25 24.1 Os10g0559600 At3g10540 - Agenet domain containing protein 2e-4 At4g17330 ATG2484-1 O.I. H.G. S.X.
0.25 24.1 Os03g0786800 At3g10540 - The start codon is not identified. 4e-54 At5g46210 CUL4 (CULLIN4) O.I. H.G. S.X.
0.24 22.4 Os09g0281600 At3g10540 - SWAP/Surp domain containing protein 6e-12 At3g52120 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein O.I. H.G. S.X.
0.23 21.2 Os08g0502800 At3g10540 - SWIB/MDM2 domain containing protein 2e-5 At4g22360 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.21 17.9 Os06g0105900 At3g10540 - Conserved hypothetical protein 1e-4 At4g01290 unknown protein O.I. H.G. S.X.
0.16 11.3 Os06g0206100 At3g10540 - Protein of unknown function DUF1296 family protein 4e-4 At3g13990 unknown protein O.I. H.G. S.X.
0.15 10.3 Os03g0794800 At3g10540 - XRN3 2e-25 At1g54490 XRN4 (EXORIBONUCLEASE 4) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.81	94.8	Os01g0872800	At3g10540	-	3-phosphoinositide-dependent protein kinase-1(Fragment)	2e-17	At3g10540	3-phosphoinositide-dependent protein kinase, putative	O.I.	H.G.	S.X.
0.50	68.0	Os10g0115600	At3g10540	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	2e-9	At3g50670	U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K)	O.I.	H.G.	S.X.
0.45	58.8	Os01g0184900	At3g10540	-	SSRP1 protein	9e-11	At3g28730	ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP)	O.I.	H.G.	S.X.
0.41	52.4	Os05g0506300	At3g10540	-	Conserved hypothetical protein	4e-2	At4g25620	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.40	51.1	Os06g0558700	At3g10540	-	Poly(A) polymerase, RNA-binding region domaincontaining protein	6e-8	At2g25850	nucleotidyltransferase family protein	O.I.	H.G.	S.X.
0.39	48.3	Os03g0254700	At3g10540	-	CTLH, C-terminal to LisH motif domain containingprotein	2e-40	At1g15750	TPL (TOPLESS)	O.I.	H.G.	S.X.
0.39	48.3	Os07g0583700	At3g10540	-	WRKY transcription factor 34	1e-21	At4g26640	WRKY20	O.I.	H.G.	S.X.
0.37	45.0	Os03g0239400	At3g10540	-	Basic-leucine zipper (bZIP) transcription factordomain containing protein	2e-2	At1g32150	bZIP transcription factor family protein	O.I.	H.G.	S.X.
0.36	44.0	Os02g0827300	At3g10540	-	Protein of unknown function DUF382 domaincontaining protein	7e-36	At4g21660	proline-rich spliceosome-associated (PSP) family protein	O.I.	H.G.	S.X.
0.35	41.7	Os07g0138100	At3g10540	-	Pleckstrin-like domain containing protein	6e-5	At2g30880	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.
0.34	40.0	Os01g0744300	At3g10540	-	Casein kinase-like protein	4e-15	At2g25760	protein kinase family protein	O.I.	H.G.	S.X.
0.32	36.3	Os05g0207900	At3g10540	-	Peptidase C48, SUMO/Sentrin/Ubl1 family protein	4e-10	At1g09730	Ulp1 protease family protein	O.I.	H.G.	S.X.
0.32	36.3	Os10g0464100	At3g10540	-	WD40-like domain containing protein	2e-8	At2g20330	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.32	36.3	Os02g0709900	At3g10540	-	Hypothetical protein	3e-2	At1g13220	LINC2 (LITTLE NUCLEI2)	O.I.	H.G.	S.X.
0.31	34.5	Os02g0781800	At3g10540	-	WD40-like domain containing protein	6e-10	At3g54190	-	O.I.	H.G.	S.X.
0.30	32.7	Os07g0495900	At3g10540	-	Regulator of nonsense transcripts 1 homolog	1e-6	At5g47010	LBA1 (LOW-LEVEL BETA-AMYLASE 1)	O.I.	H.G.	S.X.
0.30	32.7	Os02g0832700	At3g10540	-	Cation efflux protein family protein	2e-16	At3g12100	cation efflux family protein / metal tolerance protein, putative	O.I.	H.G.	S.X.
0.30	32.7	Os01g0214300	At3g10540	-	Hypothetical protein	3e-4	At1g17790	DNA-binding bromodomain-containing protein	O.I.	H.G.	S.X.
0.28	31.1	Os04g0440100	At3g10540	-	Nonsense-mediated decay UPF3 domain containingprotein	2e-9	At1g33980	Smg-4/UPF3 family protein	O.I.	H.G.	S.X.
0.27	27.5	Os03g0165600	At3g10540	-	Peptidase C19, ubiquitin carboxyl-terminalhydrolase 2 family protein	3e-1	At3g47890	ubiquitin thiolesterase/ zinc ion binding	O.I.	H.G.	S.X.
0.27	27.5	Os03g0750800	At3g10540	-	Transcriptional adaptor ADA2b (AT4g16420/dl4235c)	9e-11	At4g16420	ADA2B (HOMOLOG OF YEAST ADA2 2B)	O.I.	H.G.	S.X.
0.27	27.5	Os02g0162600	At3g10540	-	Conserved hypothetical protein	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.26	25.6	Os08g0176800	At3g10540	-	contains InterPro domain(s): IPR001680, IPR011046	6e-45	At1g80670	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.26	25.6	Os01g0813500	At3g10540	-	Vacuolar protein sorting 36 family protein	4e-3	At5g04920	vacuolar protein sorting 36 family protein / VPS36 family protein	O.I.	H.G.	S.X.
0.25	24.1	Os10g0559600	At3g10540	-	Agenet domain containing protein	2e-4	At4g17330	ATG2484-1	O.I.	H.G.	S.X.
0.25	24.1	Os03g0786800	At3g10540	-	The start codon is not identified.	4e-54	At5g46210	CUL4 (CULLIN4)	O.I.	H.G.	S.X.
0.24	22.4	Os09g0281600	At3g10540	-	SWAP/Surp domain containing protein	6e-12	At3g52120	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein	O.I.	H.G.	S.X.
0.23	21.2	Os08g0502800	At3g10540	-	SWIB/MDM2 domain containing protein	2e-5	At4g22360	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.
0.21	17.9	Os06g0105900	At3g10540	-	Conserved hypothetical protein	1e-4	At4g01290	unknown protein	O.I.	H.G.	S.X.
0.16	11.3	Os06g0206100	At3g10540	-	Protein of unknown function DUF1296 family protein	4e-4	At3g13990	unknown protein	O.I.	H.G.	S.X.
0.15	10.3	Os03g0794800	At3g10540	-	XRN3	2e-25	At1g54490	XRN4 (EXORIBONUCLEASE 4)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Gma.7774.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g10540: 3-phosphoinositide-dependent protein kinase, putative (HF=1e-26)
Module size	6 genes
NF	0.81
%ile	98.5

Co-expression analysis

Gene ID Gma.7774.1.S1_at Gene name Homology with ArabidopsisSimilar to At3g10540: 3-phosphoinositide-dependent protein kinase, putative (HF=1e-26) Module size 6 genes NF 0.81 %ile 98.5

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Gma.7774.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g10540: 3-phosphoinositide-dependent protein kinase, putative (HF=1e-26)

Module size 6 genes

NF 0.81

%ile 98.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays