| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
| 0.98 | 100.0 | 0.96 | Gma.773.1.S1_a_at | CD397056 | - | - | 2e-19 | At5g55130 | CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5) | O.I. | H.G. | S.X. | |
| 0.63 | 82.9 | 0.97 | Gma.11837.1.S1_at | BQ296775 | - | - | 1e-67 | At5g60790 | ATGCN1 | O.I. | H.G. | S.X. | |
| 0.54 | 74.8 | 0.96 | GmaAffx.91914.1.S1_at | CF807639 | - | - | 7e-5 | At1g22270 | unknown protein | O.I. | H.G. | S.X. | |
| 0.50 | 71.7 | 0.96 | GmaAffx.89486.1.A1_s_at | CK606194 | - | - | 1e-44 | At5g20070 | ATNUDX19 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19) | O.I. | H.G. | S.X. | |
| 0.50 | 71.7 | 0.97 | GmaAffx.91914.1.S1_x_at | CF807639 | - | - | 7e-5 | At1g22270 | unknown protein | O.I. | H.G. | S.X. | |
| 0.48 | 67.7 | 0.97 | Gma.10874.1.S1_at | BG650534 | - | - | 5e-14 | At4g17760 | damaged DNA binding / exodeoxyribonuclease III | O.I. | H.G. | S.X. | |
| 0.44 | 63.3 | 0.96 | Gma.5674.1.S1_a_at | CA937173 | - | - | 4e-36 | At3g58610 | ketol-acid reductoisomerase | O.I. | H.G. | S.X. | |
| 0.43 | 60.6 | 0.97 | Gma.15277.1.A1_at | BE824237 | - | - | 8e-10 | At3g04460 | PEX12 | O.I. | H.G. | S.X. | |
| 0.41 | 58.1 | 0.97 | Gma.18061.1.S1_at | CD393031 | - | - | 3e-58 | At2g24200 | cytosol aminopeptidase | O.I. | H.G. | S.X. | |
| 0.40 | 57.1 | 0.96 | GmaAffx.37940.1.S1_at | BU547999 | - | - | 7e+0 | At5g23680 | sterile alpha motif (SAM) domain-containing protein | O.I. | H.G. | S.X. | |
| 0.38 | 53.3 | 0.97 | GmaAffx.16746.2.A1_at | AW279003 | - | - | 2e-1 | At5g48530 | unknown protein | O.I. | H.G. | S.X. | |
| 0.37 | 51.7 | 0.97 | Gma.2161.1.S1_a_at | CD404355 | - | - | 3e-20 | At1g03330 | small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative | O.I. | H.G. | S.X. | |
| 0.36 | 50.8 | 0.97 | Gma.4795.1.A1_at | AW310402 | - | - | 4e+0 | At3g24216 | unknown protein | O.I. | H.G. | S.X. | |
| 0.35 | 48.6 | 0.98 | Gma.12088.1.S1_s_at | BG508802 | - | - | 2e-21 | At3g18210 | oxidoreductase, 2OG-Fe(II) oxygenase family protein | O.I. | H.G. | S.X. | |
| 0.34 | 47.2 | 0.98 | Gma.10164.1.A1_at | CD411046 | - | - | 1e-2 | At5g66350 | SHI (SHORT INTERNODES) | O.I. | H.G. | S.X. | |
| 0.34 | 47.2 | 0.97 | Gma.4975.1.S1_at | BI970178 | - | - | 6e-25 | At5g06420 | zinc finger (CCCH-type/C3HC4-type RING finger) family protein | O.I. | H.G. | S.X. | |
| 0.34 | 47.2 | 0.97 | Gma.1301.1.S1_at | AW350101 | - | - | 8e-34 | At3g06790 | plastid developmental protein DAG, putative | O.I. | H.G. | S.X. | |
| 0.31 | 42.2 | 0.98 | Gma.11316.5.S1_at | AW201374 | - | - | 5e-11 | At3g56150 | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) | O.I. | H.G. | S.X. | |
| 0.30 | 40.4 | 0.96 | Gma.12519.1.A1_at | CD395828 | - | - | 1e+1 | At5g40500 | unknown protein | O.I. | H.G. | S.X. | |
| 0.29 | 39.0 | 0.98 | Gma.5126.1.S1_at | BI971128 | - | - | 1e-1 | At1g05770 | jacalin lectin family protein | O.I. | H.G. | S.X. | |
| 0.27 | 35.7 | 0.97 | Gma.10476.1.A1_at | CD400178 | - | - | 4e+0 | At2g04780 | FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7) | O.I. | H.G. | S.X. | |
| 0.27 | 35.7 | 0.98 | GmaAffx.11747.3.A1_at | BG237380 | - | - | 4e+0 | At2g39310 | JAL22 (JACALIN-RELATED LECTIN 22) | O.I. | H.G. | S.X. | |
| 0.27 | 35.7 | 0.97 | GmaAffx.67054.1.S1_at | BI971318 | - | - | 4e-8 | At5g65540 | unknown protein | O.I. | H.G. | S.X. | |
| 0.26 | 33.9 | 0.96 | GmaAffx.90149.1.A1_s_at | CF805874 | - | - | 2e-2 | At1g05835 | unknown protein | O.I. | H.G. | S.X. | |
| 0.25 | 32.6 | 0.97 | GmaAffx.76633.1.S1_at | AW396184 | - | - | 1e-7 | At4g30820 | cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related | O.I. | H.G. | S.X. | |
| 0.25 | 32.6 | 0.97 | Gma.4938.1.S1_a_at | CD393756 | - | - | 1e-60 | At4g13720 | inosine triphosphate pyrophosphatase, putative / HAM1 family protein | O.I. | H.G. | S.X. | |
| 0.24 | 30.9 | 0.98 | Gma.10114.1.A1_at | CD411220 | - | - | 6e-1 | At2g40600 | appr-1-p processing enzyme family protein | O.I. | H.G. | S.X. | |
| 0.24 | 30.9 | 0.97 | GmaAffx.73873.1.S1_at | BQ298926 | - | - | 2e+0 | At5g57290 | 60S acidic ribosomal protein P3 (RPP3B) | O.I. | H.G. | S.X. | |
| 0.23 | 29.9 | 0.98 | Gma.5540.1.S1_at | CD410834 | - | - | 2e-19 | At3g22990 | LFR (LEAF AND FLOWER RELATED) | O.I. | H.G. | S.X. | |
| 0.23 | 29.9 | 0.97 | Gma.11337.1.S1_at | CD402585 | - | - | 1e-79 | At1g80070 | SUS2 (ABNORMAL SUSPENSOR 2) | O.I. | H.G. | S.X. | |
| 0.23 | 29.9 | 0.97 | Gma.582.1.S1_at | CD416843 | - | - | 4e-8 | At3g18165 | MOS4 (Modifier of snc1,4) | O.I. | H.G. | S.X. | |
| 0.22 | 28.1 | 0.97 | Gma.10051.1.A1_at | CD393821 | - | - | 9e-1 | At3g06035 | unknown protein | O.I. | H.G. | S.X. | |
| 0.21 | 26.6 | 0.97 | Gma.8234.1.S1_at | BQ613075 | - | - | 1e-24 | At1g65000 | unknown protein | O.I. | H.G. | S.X. | |
| 0.21 | 26.6 | 0.98 | GmaAffx.46238.1.S1_at | BF595415 | - | - | 2e-2 | At1g80560 | 3-isopropylmalate dehydrogenase, chloroplast, putative | O.I. | H.G. | S.X. | |
| 0.20 | 25.1 | 0.98 | GmaAffx.45426.1.S1_at | AW348630 | - | - | 7e-3 | At4g38495 | - | O.I. | H.G. | S.X. | |
| 0.20 | 25.1 | 0.98 | Gma.7101.1.S1_at | BI471297 | - | - | 5e-29 | At2g27350 | OTU-like cysteine protease family protein | O.I. | H.G. | S.X. | |
| 0.19 | 23.7 | 0.98 | Gma.5774.1.S1_at | BG511460 | - | - | 2e+0 | At3g60060 | - | O.I. | H.G. | S.X. | |
| 0.18 | 22.3 | 0.98 | Gma.6459.1.S1_at | BM567880 | - | - | 3e-59 | At1g04870 | PRMT10 | O.I. | H.G. | S.X. | |
| 0.17 | 21.2 | 0.97 | Gma.12059.1.S1_at | BG651492 | - | - | 2e+0 | At4g01430 | nodulin MtN21 family protein | O.I. | H.G. | S.X. | |
| 0.15 | 18.7 | 0.97 | Gma.16518.1.S1_at | CD414016 | - | - | 5e-3 | At3g27100 | - | O.I. | H.G. | S.X. | |
| 0.15 | 18.7 | 0.97 | Gma.8087.1.S1_at | BM093904 | - | - | 2e-1 | At3g44150 | unknown protein | O.I. | H.G. | S.X. | |
| 0.12 | 15.1 | 0.98 | Gma.773.1.S1_at | CD397056 | - | - | 2e-19 | At5g55130 | CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5) | O.I. | H.G. | S.X. | |
| 0.12 | 15.1 | 0.98 | Gma.3626.1.S1_at | BE800416 | - | - | 5e-38 | At2g44100 | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) | O.I. | H.G. | S.X. | |
| 0.11 | 14.2 | 0.98 | Gma.6112.1.S1_at | AY143592.1 | urease accessory protein UreF | - | 9e-9 | At1g21840 | UREF (urease accessory protein F) | O.I. | H.G. | S.X. | |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
| 3.9 | 97.1 | GSM309343 | transgenic RNAiOleosin, biol rep 1, tech rep 1 | GSE12300 | Suppression of oleosin in soybean cotyledon |  |
| 3.9 | 97.1 | GSM309344 | transgenic RNAiOleosin, biol rep 1, tech rep 2 | GSE12300 | Suppression of oleosin in soybean cotyledon | |
| 3.8 | 97.0 | GSM309557 | storage protein suppression expt, RNAi biol rep1, tech rep2 | GSE12314 | Storage Protein Suppression in Transgenic Soybean Cotyledons | |
| 3.7 | 96.8 | GSM309530 | storage protein suppression expt, RNAi biol rep2, tech rep1 | GSE12314 | Storage Protein Suppression in Transgenic Soybean Cotyledons | |
| 3.6 | 96.7 | GSM309529 | storage protein suppression expt, RNAi biol rep1, tech rep1 | GSE12314 | Storage Protein Suppression in Transgenic Soybean Cotyledons | |
| 3.5 | 96.6 | GSM309341 | Wild type 1 | GSE12300 | Suppression of oleosin in soybean cotyledon | |
| 3.5 | 96.6 | GSM309342 | Wild type 2 | GSE12300 | Suppression of oleosin in soybean cotyledon | |
| 3.4 | 96.4 | GSM309345 | transgenic RNAiOleosin, biol rep 2, tech rep 1 | GSE12300 | Suppression of oleosin in soybean cotyledon | |
| 3.3 | 96.2 | GSM184829 | Whole Seed at the globular stage, biological replicate 2 | GSE6414 | Expression data from soybean seed compartments with embryos at the globular stage | |
| 3.3 | 96.2 | GSM309531 | storage protein suppression expt, RNAi biol rep2, tech rep2 | GSE12314 | Storage Protein Suppression in Transgenic Soybean Cotyledons | |
| 3.3 | 96.2 | GSM184828 | Whole Seed at the globular stage, biological replicate 1 | GSE6414 | Expression data from soybean seed compartments with embryos at the globular stage | |
| 3.3 | 96.2 | GSM258503 | Soybean shoot apical meristem, 2 short-day replicate B | GSE10251 | Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans | |
| 3.2 | 96.0 | GSM309346 | transgenic RNAiOleosin, biol rep 2, tech rep 2 | GSE12300 | Suppression of oleosin in soybean cotyledon | |
| 3.2 | 96.0 | GSM309527 | storage protein suppression expt, control tech rep1 | GSE12314 | Storage Protein Suppression in Transgenic Soybean Cotyledons | |
| 3.1 | 95.8 | GSM309528 | storage protein suppression expt, control tech rep2 | GSE12314 | Storage Protein Suppression in Transgenic Soybean Cotyledons | |
| 3.0 | 95.6 | GSM258504 | Soybean shoot apical meristem, 4 short-day replicate B | GSE10251 | Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans | |
| 3.0 | 95.6 | GSM293126 | 3_C038.1O.R9O1P, Experimental replicate 1 | GSE11611 | Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae | |
