Co-expression analysis

Gene ID	Gma.7709.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g35530: 40S ribosomal protein S3 (RPS3C) (HF=7e+0)
Module size	20 genes
NF	0.26
%ile	51.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.4	0.98	Gma.7709.1.A1_at	AW350226	-	-	7e+0	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	Gma.9189.1.A1_at	BE822892	-	-	2e-23	At4g27690	VPS26B (VACUOLAR PROTEIN SORTING 26B)	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.98	Gma.1517.2.S1_a_at	BE059859	-	-	8e-18	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	Gma.13073.1.S1_at	BQ297562	-	-	1e-42	At3g54170	ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.9522.1.S1_at	AW307593	MYB transcription factor MYB107	-	6e-7	At1g17520	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.8062.1.A1_a_at	BI971176	-	-	1e-7	At2g21630	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	GmaAffx.14520.2.S1_at	BE802906	-	-	2e-2	At1g76260	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	GmaAffx.39202.1.S1_at	AW395777	-	-	1e-15	At3g09300	ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	Gma.8227.2.S1_a_at	BU549248	-	-	5e-28	At2g26590	adhesion regulating molecule family	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.98	Gma.6890.1.A1_s_at	BU550718	-	-	1e-1	At2g31710	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	Gma.15720.1.S1_at	CD401028	-	-	3e-11	At4g30480	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	Gma.8310.1.S1_at	BF008729	-	-	1e-42	At2g15240	UNC-50 family protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.98	Gma.5527.1.S1_at	AI416580	-	-	1e-5	At5g62600	transportin-SR-related	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.98	Gma.13044.1.S1_at	CD397211	-	-	5e-3	At5g62575	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.98	GmaAffx.7564.2.S1_at	BG509629	-	-	2e-126	At5g64070	PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	GmaAffx.28102.1.S1_at	BQ453371	-	-	1e-50	At1g20575	dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	Gma.1353.2.S1_at	BG041704	-	-	1e-47	At4g26100	CK1 (CASEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.99	Gma.10051.2.S1_at	AW508986	-	-	2e-9	At4g11790	Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.98	Gma.6234.1.S1_at	BQ612367	-	-	3e-31	At3g21865	PEX22 (peroxin 22)	O.I.	H.G.	S.X.	Please select
0.12	15.1	0.99	Gma.5720.1.S1_s_at	AW348669	-	-	4e-5	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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