Co-expression analysis

Gene ID	Gma.7412.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g75630: AVA-P4 (HF=4e-78)
Module size	6 genes
NF	0.34
%ile	61.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.3	0.98	Gma.7412.1.S1_at	CD412844	-	-	4e-78	At1g75630	AVA-P4	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.15807.1.A1_at	CD410831	-	-	1e+0	At2g17442	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.8672.1.A1_at	BU764295	-	-	8e-1	At2g01650	PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.3275.1.S1_at	BG651349	-	-	7e-28	At5g42090	-	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.98	GmaAffx.14960.1.S1_s_at	BQ630244	EREBP/AP2 transcription factor	-	2e+0	At5g34828	-	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.98	Gma.17407.1.S1_at	BG650554	-	-	6e-22	At4g30600	signal recognition particle receptor alpha subunit family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.9	GSM191088	Soybean_Cotyledon_II2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.7	97.8	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.5	97.7	GSM201121	Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.4	97.6	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.9	97.1	GSM201123	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.8	97.0	GSM201120	Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.7	96.8	GSM209597	susceptible_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.5	96.6	GSM209577	susceptible_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.5	96.6	GSM201129	Whole Seed at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM209593	susceptible_6hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.2	96.0	GSM209585	resistant_12hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.1	95.8	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.1	95.8	GSM209584	susceptible_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.1	95.8	GSM209574	resistant_6hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.1	95.8	GSM209583	resistant_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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