Co-expression analysis

Gene ID	Gma.732.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g07390: PQ-loop repeat family protein / transmembrane family protein (HF=4e-7)
Module size	6 genes
NF	0.53
%ile	84.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.98	Gma.732.1.A1_at	AW309355	-	-	4e-7	At4g07390	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.98	GmaAffx.92974.1.S1_s_at	CF808699	-	-	8e-2	At3g17780	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.99	Gma.4035.1.S1_at	BQ453456	-	-	1e-38	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.99	Gma.448.2.S1_a_at	BM091754	-	-	3e-21	At3g60820	PBF1	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.99	Gma.5368.1.S1_at	BQ627877	-	-	2e-30	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	Gma.17344.1.S1_at	CD409198	-	-	7e-41	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	95.6	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

A co-expression module including the grape gene, 1621853_at, orthologous to the query gene, Gma.732.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1621853_at	At4g07390	hypothetical protein LOC100262402	-	1e+0	At1g77520	O-methyltransferase family 2 protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1616759_at	At4g07390	hypothetical protein LOC100244675	-	9e-26	At3g18430	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1609840_at	At4g07390	-	-	2e+0	At5g41640	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1609135_at	At4g07390	-	-	1e+0	At5g56060	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	O.I.	H.G.	S.X.	Please select
0.22	25.6	1614613_at	At4g07390	hypothetical protein LOC100257387	-	6e-3	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	O.I.	H.G.	S.X.	Please select
0.22	25.6	1612330_at	At4g07390	hypothetical protein LOC100242653	-	2e-8	At1g71750	phosphoribosyltransferase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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