Co-expression analysis

Gene ID	Gma.732.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g07390: PQ-loop repeat family protein / transmembrane family protein (HF=4e-7)
Module size	6 genes
NF	0.53
%ile	84.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.98	Gma.732.1.A1_at	AW309355	-	-	4e-7	At4g07390	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.98	GmaAffx.92974.1.S1_s_at	CF808699	-	-	8e-2	At3g17780	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.99	Gma.4035.1.S1_at	BQ453456	-	-	1e-38	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.99	Gma.448.2.S1_a_at	BM091754	-	-	3e-21	At3g60820	PBF1	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.99	Gma.5368.1.S1_at	BQ627877	-	-	2e-30	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	Gma.17344.1.S1_at	CD409198	-	-	7e-41	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	95.6	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.77719.1.S1_at, orthologous to the query gene, Gma.732.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.1	TaAffx.77719.1.S1_at	At4g07390	-	-	1e+0	At1g03680	ATHM1	O.I.	H.G.	S.X.	Please select
0.49	69.7	TaAffx.22947.1.S1_at	At4g07390	-	-	8e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.43	62.2	TaAffx.51916.1.S1_at	At4g07390	-	-	3e+0	At4g26010	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.28933.2.S1_at	At4g07390	-	-	9e-26	At4g14240	-	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.104952.1.S1_at	At4g07390	-	-	5e-1	At2g38780	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.8084.2.S1_at	At4g07390	-	-	3e-2	At5g02480	-	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.23406.1.S1_at	At4g07390	-	-	9e-4	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select
0.37	53.0	TaAffx.78296.1.S1_at	At4g07390	-	-	8e-1	At5g45700	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.78266.1.S1_at	At4g07390	-	-	2e-4	At3g25480	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.28142.2.S1_at	At4g07390	-	-	3e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.23610.1.S1_at	At4g07390	-	-	1e+0	At4g37483	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.15154.2.S1_s_at	At4g07390	-	-	9e-1	At3g62030	peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.9551.1.S1_at	At4g07390	-	-	1e+0	At2g36410	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	TaAffx.14777.1.A1_at	At4g07390	-	-	1e+0	At3g49580	LSU1 (RESPONSE TO LOW SULFUR 1)	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.14684.1.S1_at	At4g07390	-	-	1e+0	At5g03110	-	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.28190.2.S1_a_at	At4g07390	-	-	7e-2	At5g07620	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.614.1.S1_at	At4g07390	-	-	9e-2	At3g25400	-	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.38022.1.S1_at	At4g07390	-	-	1e-3	At3g56440	AtATG18d	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.974.2.S1_at	At4g07390	-	-	5e+0	At3g28956	catalytic/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.105344.1.S1_at	At4g07390	-	-	4e-6	At4g14090	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.79610.1.S1_at	At4g07390	-	-	9e-1	At1g26762	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.12628.1.S1_at	At4g07390	-	-	9e-1	At5g04260	WCRKC2 (WCRKC THIOREDOXIN 2)	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.20735.3.A1_at	At4g07390	-	-	1e+0	At1g67590	remorin family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	TaAffx.80253.1.S1_at	At4g07390	-	-	3e-1	At5g05140	transcription elongation factor-related	O.I.	H.G.	S.X.	Please select
0.16	18.2	RPTR-Ta-L36849-1_at	At4g07390	-	-				O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.16985.2.S1_at	At4g07390	-	-	4e+0	At4g16141	sequence-specific DNA binding / transcription factor/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.23270.2.A1_at	At4g07390	-	-	2e+1	At5g22608	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	TaAffx.4355.1.S1_at	At4g07390	-	-	5e+0	At4g02370	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	TaAffx.27409.1.S1_at	At4g07390	-	-	4e+0	At1g02405	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	TaAffx.113296.1.S1_s_at	At4g07390	-	-	2e+1	At4g21950	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	TaAffx.93094.1.S1_at	At4g07390	-	-	4e+0	At2g27390	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	TaAffx.143995.21.A1_at	At4g07390	-	-	1e-6	At5g24930	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	TaAffx.64295.1.A1_at	At4g07390	-	-	2e+0	At3g27750	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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