CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.7259.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g24160: PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) (HF=3e-3)

Module size 6 genes

NF 0.34

%ile 62.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 78.2 0.98 Gma.7259.1.S1_at CD398809 - - 3e-3 At3g24160 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) O.I. H.G. S.X.
0.57 78.8 0.98 Gma.4379.1.S1_x_at CD393195 - - 1e-23 At4g11150 TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) O.I. H.G. S.X.
0.55 76.3 0.98 Gma.1434.1.S1_at AW349400 - - 0 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) O.I. H.G. S.X.
0.32 43.7 0.98 Gma.13321.1.S1_at CD392393 - - 1e-14 At4g13010 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.
0.18 22.3 0.98 Gma.13295.1.S1_at CD412186 - - 9e-46 At5g53180 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) O.I. H.G. S.X.
0.18 22.3 0.98 Gma.4037.1.S1_at AW309605 - - 2e-177 At1g09840 ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.1067.2.A1_at, orthologous to the query gene, Gma.7259.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 74.4 Zm.1067.2.A1_at At3g24160 vacuolar ATP synthase 16 kDa proteolipid subunit - 2e-56 At1g75630 AVA-P4 O.I. H.G. S.X.
0.65 82.1 Zm.14877.1.S1_at At3g24160 - - 1e+0 At1g59700 ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16) O.I. H.G. S.X.
0.59 76.1 Zm.4965.1.A1_at At3g24160 cyclase/dehydrase family protein - 2e-1 At5g46790 unknown protein O.I. H.G. S.X.
0.55 71.6 Zm.326.1.S1_at At3g24160 response regulator 7 - 3e+0 At5g41761 unknown protein O.I. H.G. S.X.
0.53 69.1 Zm.14115.1.A1_at At3g24160 hypothetical protein LOC100278990 - 2e+0 At5g19750 peroxisomal membrane 22 kDa family protein O.I. H.G. S.X.
0.51 66.4 Zm.18825.1.A1_at At3g24160 hypothetical protein LOC100194340 - 8e+0 At3g17675 copper ion binding / electron carrier O.I. H.G. S.X.
0.47 59.9 Zm.16794.1.A1_at At3g24160 isopentenyl pyrophosphate isomerase - 7e-35 At5g16440 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) O.I. H.G. S.X.
0.46 58.4 Zm.5947.1.A1_at At3g24160 - - 3e+0 At2g16490 XH domain-containing protein O.I. H.G. S.X.
0.45 56.4 Zm.2631.1.S1_at At3g24160 hypothetical protein LOC100191885 - 5e-5 At2g21730 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) O.I. H.G. S.X.
0.41 49.7 Zm.5207.1.S1_at At3g24160 hypothetical protein LOC100192596 - 5e-23 At4g03120 proline-rich family protein O.I. H.G. S.X.
0.41 49.7 Zm.12528.1.A1_at At3g24160 hypothetical protein LOC100274560 - 3e+0 At5g50740 metal ion binding O.I. H.G. S.X.
0.40 48.5 Zm.520.1.S1_x_at At3g24160 cellulose synthase-4 - 2e-74 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) O.I. H.G. S.X.
0.40 48.5 Zm.1806.1.A1_at At3g24160 - - 3e-1 At5g44900 transmembrane receptor O.I. H.G. S.X.
0.37 42.3 Zm.16829.3.S1_at At3g24160 - - 4e+0 At5g55240 caleosin-related family protein / embryo-specific protein, putative O.I. H.G. S.X.
0.35 38.9 Zm.11255.1.S1_at At3g24160 hypothetical protein LOC100217136 - 3e-32 At5g40200 DegP9 (DegP protease 9) O.I. H.G. S.X.
0.32 33.4 Zm.4182.1.S1_at At3g24160 hypothetical protein LOC100276027 - 1e-4 At5g54855 pollen Ole e 1 allergen and extensin family protein O.I. H.G. S.X.
0.26 22.7 Zm.13771.1.A1_at At3g24160 hypothetical protein LOC100216812 - 1e-17 At1g72710 CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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