Co-expression analysis

Gene ID Gma.7259.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g24160: PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) (HF=3e-3)
Module size 6 genes
NF 0.34
%ile 62.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5678.20.98Gma.7259.1.S1_atCD398809--3e-3At3g24160PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)O.I.H.G.S.X.
0.5778.80.98Gma.4379.1.S1_x_atCD393195--1e-23At4g11150TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)O.I.H.G.S.X.
0.5576.30.98Gma.1434.1.S1_atAW349400--0At1g78900VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)O.I.H.G.S.X.
0.3243.70.98Gma.13321.1.S1_atCD392393--1e-14At4g13010oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.1822.30.98Gma.13295.1.S1_atCD412186--9e-46At5g53180PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)O.I.H.G.S.X.
0.1822.30.98Gma.4037.1.S1_atAW309605--2e-177At1g09840ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.200200.1.S1_x_at, orthologous to the query gene, Gma.7259.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5582.2PtpAffx.200200.1.S1_x_atAt3g24160hypothetical protein-2e-16At3g24160PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)O.I.H.G.S.X.
0.6187.0PtpAffx.68287.1.S1_atAt3g24160--4e-53At5g19780TUA5O.I.H.G.S.X.
0.6086.0PtpAffx.34022.3.S1_a_atAt3g24160hypothetical protein-7e-6At5g11680unknown proteinO.I.H.G.S.X.
0.5784.2PtpAffx.200651.1.S1_atAt3g24160hypothetical protein-3e-6At3g16350myb family transcription factorO.I.H.G.S.X.
0.4268.6Ptp.2347.1.A1_x_atAt3g24160hypothetical protein-1e-140At3g27240cytochrome c1, putativeO.I.H.G.S.X.
0.3458.3Ptp.2347.1.A1_atAt3g24160hypothetical protein-1e-140At3g27240cytochrome c1, putativeO.I.H.G.S.X.
0.3357.5PtpAffx.40097.1.S1_atAt3g24160hypothetical protein-5e-27At1g63050membrane bound O-acyl transferase (MBOAT) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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