Co-expression analysis

Gene ID Gma.7159.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g14690: CYP72A15 (HF=1e+0)
Module size 6 genes
NF 0.17
%ile 39.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5678.20.96Gma.7159.1.A1_atBU545176--1e+0At3g14690CYP72A15O.I.H.G.S.X.
0.4463.30.97GmaAffx.81888.1.S1_atBE210383serine/threonine kinase-related protein-5e-7At4g23270protein kinase family proteinO.I.H.G.S.X.
0.2532.60.97Gma.10384.1.S1_atBE658298mitogen-activated protein kinase kinase MAPKK2-4e+0At4g02210unknown proteinO.I.H.G.S.X.
0.1013.00.96Gma.6558.1.S1_atBU084402--2e-6At1g36160ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)O.I.H.G.S.X.
0.1013.00.97GmaAffx.39725.1.S1_atBI945410--8e-1At3g57280unknown proteinO.I.H.G.S.X.
0.1013.00.97Gma.6708.1.A1_atBQ610551--3e-4At1g67890protein kinase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g14690, orthologous to the query gene, Gma.7159.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.9697.3At3g14690820697CYP72A15putative cytochrome P450O.I.H.G.S.X.
0.3541.6At3g14660820694CYP72A13putative cytochrome P450O.I.H.G.S.X.
0.2830.3At3g48690824030CXE12Encodes a protein with carboxylesterase whose activity was tested using both pNA and 2,4-D-methyl.O.I.H.G.S.X.
0.2522.6At3g48000823955ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4)Encodes a putative (NAD+) aldehyde dehydrogenase.O.I.H.G.S.X.
0.2319.3At1g47128841122RD21 (responsive to dehydration 21)cysteine proteinase precursor-like protein/ dehydration stress-responsive gene (RD21)O.I.H.G.S.X.
0.2319.3At5g36160833613aminotransferase-relatedF:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:tyrosine catabolic process to phosphoenolpyruvate, cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAFO.I.H.G.S.X.
0.2319.3At5g44000834423glutathione S-transferase C-terminal domain-containing proteinF:glutathione transferase activity;P:unknown;C:chloroplast;BOFPMAO.I.H.G.S.X.
0.2014.4At3g56630824830CYP94D2member of CYP94DO.I.H.G.S.X.
0.1912.7At2g46340819242SPA1 (SUPPRESSOR OF PHYA-105 1)Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light.O.I.H.G.S.X.
0.1710.2At5g53350835416CLPXCLP protease regulatory subunit CLPX mRNA, nuclear geneO.I.H.G.S.X.
0.157.8At3g03890821082FMN bindingF:FMN binding;P:unknown;C:chloroplast;BOPMO.I.H.G.S.X.
0.157.8At3g56140824780unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, chloroplast;PBMOFVO.I.H.G.S.X.
0.157.8At4g11600826765ATGPX6 (GLUTATHIONE PEROXIDASE 6)Encodes glutathione peroxidase.O.I.H.G.S.X.
0.146.8At1g18660838447zinc finger (C3HC4-type RING finger) family proteinF:protein binding, ATP-dependent peptidase activity, binding, zinc ion binding;P:ATP-dependent proteolysis;C:unknown;MOPFBVAO.I.H.G.S.X.
0.146.8At5g58800835997quinone reductase family proteinF:oxidoreductase activity, FMN binding;P:negative regulation of transcription;C:plasma membrane;BOFPAMVO.I.H.G.S.X.
0.146.8At4g21580828243oxidoreductase, zinc-binding dehydrogenase family proteinF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOFMPAO.I.H.G.S.X.
0.135.8At3g48990824060AMP-dependent synthetase and ligase family proteinF:catalytic activity, AMP binding;P:response to cadmium ion;C:apoplast, chloroplast;BOFMPAVO.I.H.G.S.X.
0.135.8At4g03020828111transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAO.I.H.G.S.X.
0.135.8At3g52880824454monodehydroascorbate reductase, putativeEncodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2O.I.H.G.S.X.
0.124.9At2g01490814677phytanoyl-CoA dioxygenase (PhyH) family proteinF:phytanoyl-CoA dioxygenase activity;P:N-terminal protein myristoylation;C:plasma membrane;OMBFPO.I.H.G.S.X.
0.124.9At5g04830830362unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMBOO.I.H.G.S.X.
0.114.1At3g24190822005ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAVO.I.H.G.S.X.
0.114.1At4g04770825814ATABC1 (ATP BINDING CASSETTE PROTEIN 1)Encodes an iron-stimulated ATPase. A member of the NAP subfamily of ABC transporters. Involved in Fe-S cluster assembly. Similar to SufB. Involved in the regulation of iron homeostasis. Able to form homodimers. Interacts with AtNAP7 inside the chloroplast.O.I.H.G.S.X.
0.114.1At1g75370843873SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putativeF:transporter activity;P:transport;C:plasma membrane;MPFOO.I.H.G.S.X.
0.103.4At4g03260828003leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVAO.I.H.G.S.X.
0.103.4At1g32790840173RNA-binding protein, putativeRNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins.O.I.H.G.S.X.
0.092.8At1g21760838780FBP7 (F-BOX PROTEIN 7)This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures.O.I.H.G.S.X.
0.092.8At5g24460832517unknown proteinF:unknown;P:biological_process unknown;C:cell wall;PFOO.I.H.G.S.X.
0.092.8At2g31570817715ATGPX2 (GLUTATHIONE PEROXIDASE 2)glutathione peroxidase GPxO.I.H.G.S.X.
0.092.8At5g661208367443-dehydroquinate synthase, putativeF:3-dehydroquinate synthase activity, carbon-oxygen lyase activity, acting on phosphates;P:aromatic amino acid family biosynthetic process, biosynthetic process;C:chloroplast;OBFAPMVO.I.H.G.S.X.
0.092.8At1g11910837740aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis, response to salt stress;C:vacuole;MFOPBO.I.H.G.S.X.
0.082.3At1g16210838189unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVAO.I.H.G.S.X.
0.082.3At3g63520825527CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)Encodes a protein with 9-cis-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including β-carotene, lutein, zeaxanthin, and all-trans-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-cis-double or allenic bonds.O.I.H.G.S.X.
0.071.9At4g051608258644-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeEncodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.O.I.H.G.S.X.
0.071.9At5g51020835175CRL (CRUMPLED LEAF)Encodes CRL (CRUMPLED LEAF), a protein localized in the outer envelope membrane of plastids. Mutation in this gene affects the pattern of cell division, cell differentiation and plastid division.O.I.H.G.S.X.
0.071.9At5g56180835717ATARP8 (ACTIN-RELATED PROTEIN 8)encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.O.I.H.G.S.X.
0.071.9At3g19170821451ATPREP1 (PRESEQUENCE PROTEASE 1)Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowersO.I.H.G.S.X.
0.061.4At3g27090822327-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBO.I.H.G.S.X.
0.061.4At1g50020841426unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO.I.H.G.S.X.
0.051.1At4g32600829395zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVBO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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