CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.7015.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g42500: PP2A-4 (HF=3e-57)

Module size 6 genes

NF 0.23

%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 79.5 0.98 Gma.7015.1.S1_at CD402211 - - 3e-57 At2g42500 PP2A-4 O.I. H.G. S.X.
0.44 63.3 0.98 Gma.7239.1.S1_at CD392099 - - 2e-21 At1g17720 ATB BETA O.I. H.G. S.X.
0.21 26.6 0.98 GmaAffx.80314.1.S1_at BQ785560 - - 6e-6 At2g44950 HUB1 (HISTONE MONO-UBIQUITINATION 1) O.I. H.G. S.X.
0.18 22.3 0.98 Gma.10860.1.S1_at AW350087 - - 7e-26 At4g19860 lecithin:cholesterol acyltransferase family protein / LACT family protein O.I. H.G. S.X.
0.15 18.7 0.98 Gma.6832.1.S1_at BU550964 - - 1e-11 At1g20880 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.12 15.1 0.98 Gma.16294.1.S1_at CD413154 - - 1e-44 At1g69340 appr-1-p processing enzyme family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g42500, orthologous to the query gene, Gma.7015.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g42500 818850 PP2A-4 encodes the fourth isoform of the catalytic subunit of protein phosphatase 2A. O.I. H.G. S.X.
0.36 43.6 At3g19760 821513 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus, nucleus, membrane;BOMFPAV O.I. H.G. S.X.
0.32 35.7 At1g02130 837023 ARA-5 (ARABIDOPSIS RAS 5) Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation. O.I. H.G. S.X.
0.30 32.1 At3g60600 825231 VAP (VESICLE ASSOCIATED PROTEIN) Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. O.I. H.G. S.X.
0.30 32.1 At2g17390 816246 AKR2B (ANKYRIN REPEAT-CONTAINING 2B) Highly homologous to AKR2A. Involved in chloroplast biogenesis. Double mutants of AKR2A and AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes. O.I. H.G. S.X.
0.28 30.3 At5g59160 836034 TOPP2 Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. O.I. H.G. S.X.
0.27 26.2 At1g11650 837708 RNA-binding protein 45 (RBP45), putative F:RNA binding;P:unknown;C:unknown;MPFOBA O.I. H.G. S.X.
0.27 26.2 At2g14835 815972 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPO O.I. H.G. S.X.
0.25 22.6 At1g09640 837491 elongation factor 1B-gamma, putative / eEF-1B gamma, putative F:translation elongation factor activity;P:translational elongation;C:plasma membrane;BMOPFA O.I. H.G. S.X.
0.24 20.7 At1g08200 837341 AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2) Encodes a putative UDP-D-apiose/UPD-D-xylose synthetase. O.I. H.G. S.X.
0.24 20.7 At1g71860 843516 PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress. O.I. H.G. S.X.
0.22 17.5 At1g13320 837892 PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A) O.I. H.G. S.X.
0.18 11.4 At1g35160 840403 GF14 PHI (GF14 PROTEIN PHI CHAIN) GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1 O.I. H.G. S.X.
0.16 8.8 At4g19210 827661 ATRLI2 member of RLI subfamily O.I. H.G. S.X.
0.14 6.8 At3g54860 824651 vacuolar protein sorting protein, putative Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis. O.I. H.G. S.X.
0.14 6.8 At1g50370 841459 serine/threonine protein phosphatase, putative F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBAV O.I. H.G. S.X.
0.12 4.9 At1g30230 839903 elongation factor 1-beta / EF-1-beta F:translation elongation factor activity;P:translational elongation, response to cadmium ion;C:plasma membrane, eukaryotic translation elongation factor 1 complex;MOFP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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