Co-expression analysis

Gene ID Gma.7015.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g42500: PP2A-4 (HF=3e-57)
Module size 6 genes
NF 0.23
%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4463.30.98Gma.7239.1.S1_atCD392099--2e-21At1g17720ATB BETAO.I.H.G.S.X.
0.2126.60.98GmaAffx.80314.1.S1_atBQ785560--6e-6At2g44950HUB1 (HISTONE MONO-UBIQUITINATION 1)O.I.H.G.S.X.
0.1822.30.98Gma.10860.1.S1_atAW350087--7e-26At4g19860lecithin:cholesterol acyltransferase family protein / LACT family proteinO.I.H.G.S.X.
0.1518.70.98Gma.6832.1.S1_atBU550964--1e-11At1g20880RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.1215.10.98Gma.16294.1.S1_atCD413154--1e-44At1g69340appr-1-p processing enzyme family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g42500, orthologous to the query gene, Gma.7015.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At2g42500818850PP2A-4encodes the fourth isoform of the catalytic subunit of protein phosphatase 2A.O.I.H.G.S.X.
0.3643.6At3g19760821513eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putativeF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus, nucleus, membrane;BOMFPAVO.I.H.G.S.X.
0.3235.7At1g02130837023ARA-5 (ARABIDOPSIS RAS 5)Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation.O.I.H.G.S.X.
0.3032.1At3g60600825231VAP (VESICLE ASSOCIATED PROTEIN)Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2.O.I.H.G.S.X.
0.3032.1At2g17390816246AKR2B (ANKYRIN REPEAT-CONTAINING 2B)Highly homologous to AKR2A. Involved in chloroplast biogenesis. Double mutants of AKR2A and AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.O.I.H.G.S.X.
0.2830.3At5g59160836034TOPP2Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.O.I.H.G.S.X.
0.2726.2At1g11650837708RNA-binding protein 45 (RBP45), putativeF:RNA binding;P:unknown;C:unknown;MPFOBAO.I.H.G.S.X.
0.2726.2At2g14835815972zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;MPOO.I.H.G.S.X.
0.2522.6At1g09640837491elongation factor 1B-gamma, putative / eEF-1B gamma, putativeF:translation elongation factor activity;P:translational elongation;C:plasma membrane;BMOPFAO.I.H.G.S.X.
0.2420.7At1g08200837341AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2)Encodes a putative UDP-D-apiose/UPD-D-xylose synthetase.O.I.H.G.S.X.
0.2420.7At1g71860843516PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.O.I.H.G.S.X.
0.2217.5At1g13320837892PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)O.I.H.G.S.X.
0.1811.4At1g35160840403GF14 PHI (GF14 PROTEIN PHI CHAIN)GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1O.I.H.G.S.X.
0.168.8At4g19210827661ATRLI2member of RLI subfamilyO.I.H.G.S.X.
0.146.8At3g54860824651vacuolar protein sorting protein, putativeHomologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.O.I.H.G.S.X.
0.146.8At1g50370841459serine/threonine protein phosphatase, putativeF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBAVO.I.H.G.S.X.
0.124.9At1g30230839903elongation factor 1-beta / EF-1-betaF:translation elongation factor activity;P:translational elongation, response to cadmium ion;C:plasma membrane, eukaryotic translation elongation factor 1 complex;MOFPO.I.H.G.S.X.

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