Co-expression analysis

Gene ID Gma.6885.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g51780: ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4) (HF=2e-2)
Module size 6 genes
NF 0.52
%ile 83.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6786.10.98Gma.6885.1.A1_atBU545705--2e-2At3g51780ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)O.I.H.G.S.X.
0.5071.70.98Gma.8705.1.S1_atBQ742642--1e-23At1g65430zinc finger protein-relatedO.I.H.G.S.X.
0.4463.30.98GmaAffx.55372.1.A1_atBU547082--5e-6At1g26520-O.I.H.G.S.X.
0.4463.30.98Gma.8578.1.S1_atBQ079840--4e-26At3g60150unknown proteinO.I.H.G.S.X.
0.4057.10.98Gma.6986.2.S1_s_atBI972259--7e-16At1g76150maoC-like dehydratase domain-containing proteinO.I.H.G.S.X.
0.3650.80.98Gma.2520.1.S1_atAW570245--2e-7At2g46500phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.596.6GSM209585resistant_12hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g51780, orthologous to the query gene, Gma.6885.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At3g51780824341ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. BD domain of ATBAG4 had highest similarity to human DB domain of BAG protein. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.O.I.H.G.S.X.
0.5673.0At5g10070830871RNase L inhibitor protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;OAMFPO.I.H.G.S.X.
0.3745.0At1g43900840989protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOBFVAO.I.H.G.S.X.
0.3643.6At1g74230843763GR-RBP5 (glycine-rich RNA-binding protein 5)encodes a glycine-rich RNA binding protein.O.I.H.G.S.X.
0.3643.6At5g06410830529DNAJ heat shock N-terminal domain-containing proteinF:protein binding, heat shock protein binding, chaperone binding;P:protein folding;C:unknown;BOMFPO.I.H.G.S.X.
0.3439.8At5g42670834276agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:unknown;PMOO.I.H.G.S.X.
0.3032.1At4g39280830084phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putativeF:phenylalanine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMAFPO.I.H.G.S.X.
0.3032.1At5g24650832536mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinF:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:chloroplast, plasma membrane, vacuole, mitochondrial inner membrane presequence translocase complex, chloroplast envelope;FPMOO.I.H.G.S.X.
0.2830.3At1g07705837284transcription regulatorF:transcription regulator activity;P:regulation of transcription;C:nucleus, chloroplast;MOBFPVO.I.H.G.S.X.
0.2726.2At3g06200819794guanylate kinase, putativeF:guanylate kinase activity;P:purine nucleotide metabolic process;C:chloroplast;BOMFPVO.I.H.G.S.X.
0.2726.2At3g33520823150ATARP6Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis. Along with PIE1 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times.O.I.H.G.S.X.
0.2726.2At5g56130835712transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAO.I.H.G.S.X.
0.2624.4At5g04280830307glycine-rich RNA-binding proteinF:RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleolus;MPFOBVAO.I.H.G.S.X.
0.2522.6At1g71750843505phosphoribosyltransferase family proteinF:transferase activity, hypoxanthine phosphoribosyltransferase activity;P:nucleoside metabolic process, purine ribonucleoside salvage;C:cytoplasm;BOMAPFO.I.H.G.S.X.
0.2522.6At1g05430837044unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2522.6At3g62970825472protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MPOFBO.I.H.G.S.X.
0.2522.6At5g19030832022RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBAO.I.H.G.S.X.
0.2420.7At3g07300819918eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPO.I.H.G.S.X.
0.2319.3At2g46060819214transmembrane protein-relatedF:molecular_function unknown;P:biological_process unknown;C:membrane;MPOO.I.H.G.S.X.
0.2319.3At2g29080817456ftsh3 (FtsH protease 3)encodes an FtsH protease that is localized to the mitochondrionO.I.H.G.S.X.
0.2319.3At4g14965827155AtMAPR4 (Arabidopsis thaliana membrane-associated progesterone binding protein 4)F:heme binding;P:unknown;C:endomembrane system;MFPOO.I.H.G.S.X.
0.2014.4At4g26310828737elongation factor P (EF-P) family proteinF:translation elongation factor activity;P:translational elongation;C:unknown;BOPAO.I.H.G.S.X.
0.2014.4At1g26160839157metal-dependent phosphohydrolase HD domain-containing proteinF:catalytic activity;P:biological_process unknown;C:chloroplast;BOMFAPO.I.H.G.S.X.
0.1912.7At3g12130820388KH domain-containing protein / zinc finger (CCCH type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MPOFBO.I.H.G.S.X.
0.1912.7At1g55150841958DEAD box RNA helicase, putative (RH20)F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.1912.7At3g59990825169MAP2B (METHIONINE AMINOPEPTIDASE 2B)Encodes a MAP2 like methionine aminopeptidaseO.I.H.G.S.X.
0.1811.4At2g43770818980transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOBPAVO.I.H.G.S.X.
0.1710.2At4g25550828660protein bindingF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.168.8At5g20920832216EIF2 BETAprotein synthesis initiation factor eIF2 betaO.I.H.G.S.X.
0.168.8At1g19120838495small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeF:molecular_function unknown;P:biological_process unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFPOAO.I.H.G.S.X.
0.157.8At1g54390841881PHD finger protein-relatedING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.O.I.H.G.S.X.
0.135.8At3g49560824118mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinF:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:in 6 components;PMOO.I.H.G.S.X.
0.124.9At3g60820825253PBF1Encodes 20S proteasome beta subunit PBF1 (PBF1).O.I.H.G.S.X.
0.114.1At4g32930829430unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.092.8At4g39240830080kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOAVFO.I.H.G.S.X.
0.071.9At3g57990824968unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFMBO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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