Co-expression analysis

Gene ID Gma.6781.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g40490: RNA recognition motif (RRM)-containing protein (HF=5e-2)
Module size 11 genes
NF 0.67
%ile 94.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8291.90.82Gma.6781.1.S1_atBU764071--5e-2At5g40490RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.9599.40.86GmaAffx.22396.1.S1_atBF597175--3e+0At5g11320YUC4 (YUCCA4)O.I.H.G.S.X.
0.8392.50.83GmaAffx.10629.1.S1_s_atBU760664--2e+0At3g08010ATAB2O.I.H.G.S.X.
0.7489.20.81Gma.17504.1.S1_atBF595106--2e-1At5g55200co-chaperone grpE protein, putativeO.I.H.G.S.X.
0.7187.80.83GmaAffx.10631.1.S1_atBU760887--4e+0At2g34850MEE25 (maternal effect embryo arrest 25)O.I.H.G.S.X.
0.5778.80.82Gma.1819.1.S1_atBF596825--3e-4At2g30810gibberellin-regulated family proteinO.I.H.G.S.X.
0.5778.80.86GmaAffx.70956.1.S1_atAW185248--2e+0At1g343805'-3' exonuclease family proteinO.I.H.G.S.X.
0.5778.80.91GmaAffx.25878.1.S1_atAW598559--4e-1At1g64370unknown proteinO.I.H.G.S.X.
0.5678.20.86GmaAffx.21250.1.S1_atAW598021--7e-1At1g03630POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE)O.I.H.G.S.X.
0.5474.80.90Gma.12474.1.S1_atAW703615--7e-1At1g29410PAI3 (phosphoribosylanthranilate isomerase 3)O.I.H.G.S.X.
0.4463.30.84Gma.5425.1.S1_atBU761142--4e+0At5g25570unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.799.7GSM191079Soybean_Cotyledon_ES1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
18.699.7GSM191080Soybean_Cotyledon_ES2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
18.499.7GSM201130Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
17.899.7GSM201118Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
17.499.7GSM182036Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
15.699.6GSM182035Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
14.299.6GSM201119Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
9.399.2GSM147941Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
8.399.1GSM147940Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
6.298.6GSM147939Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.696.7GSM191077Soybean_Cotyledon_SUS1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.195.8GSM191083Soybean_Cotyledon_EPD1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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