Co-expression analysis

Gene ID Gma.6696.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g23300: PYRD (pyrimidine d) (HF=2e-36)
Module size 28 genes
NF 0.45
%ile 75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8793.20.98Gma.6696.1.S1_atBI970794--2e-36At5g23300PYRD (pyrimidine d)O.I.H.G.S.X.
0.6080.70.98Gma.4208.2.S1_x_atCD401340--2e-34At1g22780PFL (POINTED FIRST LEAVES)O.I.H.G.S.X.
0.5878.80.98Gma.2819.1.S1_atBE821662--5e-33At1g72550tRNA synthetase beta subunit family proteinO.I.H.G.S.X.
0.5678.20.98Gma.13041.1.S1_atCD396718--2e-1At1g02440ATARFD1A (ADP-ribosylation factor D1A)O.I.H.G.S.X.
0.5576.30.98Gma.10782.1.S1_s_atCD410674--0At1g56070LOS1O.I.H.G.S.X.
0.5474.80.98Gma.4290.1.S1_atAF420435.1ABC transporter-like protein-2e-101At1g64550ATGCN3O.I.H.G.S.X.
0.5071.70.98GmaAffx.89191.1.A1_atCK606438--1e-20At3g0852060S ribosomal protein L41 (RPL41D)O.I.H.G.S.X.
0.5071.70.98Gma.4208.2.S1_atCD401340--2e-34At1g22780PFL (POINTED FIRST LEAVES)O.I.H.G.S.X.
0.4766.60.98Gma.317.1.S1_s_atCD416707--3e-49At2g4184040S ribosomal protein S2 (RPS2C)O.I.H.G.S.X.
0.4563.90.98Gma.8060.1.S1_atBG725572--1e-10At1g51710UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6)O.I.H.G.S.X.
0.4563.90.98Gma.11133.1.S1_s_atCD396940--2e-28At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeO.I.H.G.S.X.
0.4463.30.98Gma.2708.1.S1_atAW350781--1e-82At1g30580GTP bindingO.I.H.G.S.X.
0.4463.30.98Gma.16767.1.S1_atCD415303--6e-42At1g14610TWN2 (TWIN 2)O.I.H.G.S.X.
0.4463.30.99GmaAffx.51048.1.S1_s_atBM521698--6e-5At1g29150ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)O.I.H.G.S.X.
0.4360.60.98Gma.3820.1.S1_atAW156783--9e-34At1g30230elongation factor 1-beta / EF-1-betaO.I.H.G.S.X.
0.4057.10.98Gma.16127.1.S1_atBE473742--8e-56At1g10840TIF3H1O.I.H.G.S.X.
0.3954.50.98Gma.3887.1.S1_atBI970809--2e+0At3g16120dynein light chain, putativeO.I.H.G.S.X.
0.3954.50.99Gma.11219.1.S1_s_atCD395846--1e-16At1g1593040S ribosomal protein S12 (RPS12A)O.I.H.G.S.X.
0.3954.50.98Gma.1623.1.S1_atCD404324--3e-50At2g20580RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A)O.I.H.G.S.X.
0.3853.30.98Gma.2881.2.S1_s_atCD412647--6e-31At4g2574040S ribosomal protein S10 (RPS10A)O.I.H.G.S.X.
0.3650.80.98GmaAffx.89847.1.S1_s_atCK606576--9e-14At3g02760ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide bindingO.I.H.G.S.X.
0.3650.80.98GmaAffx.87273.1.A1_atBU544912--1e-47At3g14960galactosyltransferase family proteinO.I.H.G.S.X.
0.3548.60.98Gma.2929.2.S1_a_atBU548979--5e+0At5g0261060S ribosomal protein L35 (RPL35D)O.I.H.G.S.X.
0.3346.10.99Gma.4208.2.S1_a_atCD401340--2e-34At1g22780PFL (POINTED FIRST LEAVES)O.I.H.G.S.X.
0.3346.10.99Gma.11225.1.S1_s_atAI443347--1e-97At1g14320SAC52 (SUPPRESSOR OF ACAULIS 52)O.I.H.G.S.X.
0.3040.40.98Gma.10782.1.S1_x_atCD410674--0At1g56070LOS1O.I.H.G.S.X.
0.3040.40.98Gma.6495.1.S1_atBQ612701--5e-51At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)O.I.H.G.S.X.
0.2939.00.98Gma.1449.1.S1_s_atAY157740.1nucleoside diphosphate kinase-5e-41At4g09320NDPK1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.098.0GSM237068Soy_shoot apical meristemGSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
5.098.0GSM237069Soy_shoot apical meristem2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
5.098.0GSM267288Axillary meristem from 10-day-old soybean seedlings repliacte 2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
4.097.2GSM267287Axillary meristem from 10-day-old soybean seedlings GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
3.796.8GSM258496Vegetative soybean shoot apical meristemGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.696.7GSM258502Vegetative shoot apical meristem, replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.496.4GSM309341Wild type 1GSE12300Suppression of oleosin in soybean cotyledonLink to GEO
3.396.2GSM309342Wild type 2GSE12300Suppression of oleosin in soybean cotyledonLink to GEO
3.396.2GSM258503Soybean shoot apical meristem, 2 short-day replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.296.0GSM258501Soybean shoot apical meristem, 1 short-day treatment replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.296.0GSM258497Soybean Shoot Apical Meristem, 1 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.195.8GSM309528storage protein suppression expt, control tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
3.195.8GSM309531storage protein suppression expt, RNAi biol rep2, tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
3.095.6GSM309530storage protein suppression expt, RNAi biol rep2, tech rep1GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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