Co-expression analysis

Gene ID	Gma.6669.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g63840: RSW3 (RADIAL SWELLING 3) (HF=2e-13)
Module size	31 genes
NF	0.45
%ile	75.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.2	0.97	Gma.6669.1.S1_at	AI960146	-	-	2e-13	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.	Please select
0.62	82.1	0.98	GmaAffx.11747.2.S1_s_at	BI944899	-	-	3e-5	At5g47210	nuclear RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	Gma.16923.1.A1_s_at	AI443575	-	-	5e-5	At2g46505	SDH4	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.98	GmaAffx.72806.1.S1_at	BG651678	-	-	2e+0	At5g47360	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.98	Gma.6437.1.S1_at	CD391859	-	-	1e-25	At5g52840	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.98	Gma.4111.1.S1_at	BM891443	-	-	6e-82	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.98	Gma.2127.1.S1_at	BM270196	-	-	3e-33	At3g04600	tRNA synthetase class I (W and Y) family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.17539.1.S1_at	AF034572.1	proteasome IOTA subunit	-	2e-87	At2g05840	PAA2 (20S PROTEASOME SUBUNIT PAA2)	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.98	Gma.8114.1.S1_at	CD398562	-	-	4e-45	At4g19210	ATRLI2	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.98	Gma.2609.1.S1_s_at	CD408095	-	-	4e-73	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.97	Gma.9722.1.S1_at	BE823732	-	-	5e-4	At1g05720	selenoprotein family protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.97	Gma.2150.1.S1_at	CD401414	-	-	3e-21	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.98	Gma.11169.1.S1_x_at	BI702093	-	-	8e-85	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.98	Gma.6228.1.S1_at	BF595226	-	-	3e-123	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.11190.2.S1_a_at	BM270192	-	-	1e-81	At2g31610	40S ribosomal protein S3 (RPS3A)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.97	Gma.6296.2.S1_at	CD392554	-	-	8e-2	At3g10400	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	Gma.2259.1.S1_at	CD392275	-	-	3e-83	At1g16470	PAB1 (PROTEASOME SUBUNIT PAB1)	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	GmaAffx.92392.1.S1_at	CF808114	-	-	4e-1	At2g18970	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	GmaAffx.15307.1.S1_at	BM307140	-	-	9e-44	At4g35360	pantothenate kinase family protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.98	Gma.11021.1.S1_at	CD401781	-	-	3e-33	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	Gma.3929.1.A1_at	BU545629	-	-	4e-10	At5g18400	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.97	Gma.11169.3.S1_s_at	BI943988	-	-	1e-32	At2g36170	ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	Gma.10966.1.S1_at	CD396963	-	-	8e-130	At5g23540	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	Gma.16382.1.S1_at	AW317554	-	-	2e-61	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	Gma.3125.1.S1_at	CD392634	-	-	8e-16	At5g57440	GS1	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	Gma.1793.1.S1_x_at	AW349902	-	-	4e-2	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.98	Gma.6439.1.S1_at	BE659084	-	-	7e-34	At3g53580	diaminopimelate epimerase family protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.98	Gma.584.1.S1_at	CD402664	-	-	5e-47	At1g67430	60S ribosomal protein L17 (RPL17B)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.97	Gma.6553.1.S1_at	CD406256	-	-	2e-24	At1g74270	60S ribosomal protein L35a (RPL35aC)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	Gma.2917.1.S1_at	AW348875	-	-	4e-7	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.98	Gma.1549.1.S1_at	BI969619	-	-	1e-156	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.6	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.8	98.4	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.5	98.3	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.5	98.3	GSM182030	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.4	98.2	GSM182029	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.4	98.2	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.1	98.1	GSM191080	Soybean_Cotyledon_ES2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.0	98.0	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.6	97.7	GSM191091	Soybean_Cotyledon_SEED1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.4	97.6	GSM147934	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.3	97.5	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.3	97.5	GSM182047	Whole Seed at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.2	97.4	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.2	97.4	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.2	97.4	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.1	97.3	GSM191075	Soybean_Cotyledon_EP1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.0	97.2	GSM191076	Soybean_Cotyledon_EP2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.0	97.2	GSM182033	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.9	97.1	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.9	97.1	GSM191092	Soybean_Cotyledon_SEED2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.9	97.1	GSM201129	Whole Seed at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.6	96.7	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.6	96.7	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.6	96.7	GSM201115	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.6	96.7	GSM182048	Whole Seed at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.5	96.6	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.5	96.6	GSM184829	Whole Seed at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.4	96.4	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.4	96.4	GSM201111	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM258503	Soybean shoot apical meristem, 2 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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