Co-expression analysis

Gene ID	Gma.6602.2.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g16440: IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) (HF=4e-103)
Module size	6 genes
NF	0.56
%ile	87.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	Gma.6602.2.S1_s_at	BI320883	-	-	4e-103	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.3107.1.S1_at	BE658900	-	-	1e-97	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.97	Gma.10455.1.S1_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.1689.1.S1_s_at	AB007907.1	6-phosphogluconate dehydrogenase	-	1e-114	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	Gma.4300.1.S1_s_at	S46989.1	chalcone synthase	-	5e-29	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	95.8	GSM293553	67_3017.2A.R9A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the maize gene, Zm.16794.1.A1_at, orthologous to the query gene, Gma.6602.2.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	Zm.16794.1.A1_at	At5g16440	isopentenyl pyrophosphate isomerase	-	7e-35	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.73	89.9	Zm.5207.1.S1_at	At5g16440	hypothetical protein LOC100192596	-	5e-23	At4g03120	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.16829.3.S1_at	At5g16440	-	-	4e+0	At5g55240	caleosin-related family protein / embryo-specific protein, putative	O.I.	H.G.	S.X.	Please select
0.57	75.1	Zm.14115.1.A1_at	At5g16440	hypothetical protein LOC100278990	-	2e+0	At5g19750	peroxisomal membrane 22 kDa family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.2966.1.S1_at	At5g16440	hypothetical protein LOC100273775	-	8e-1	At1g01810	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.4965.1.A1_at	At5g16440	cyclase/dehydrase family protein	-	2e-1	At5g46790	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.1806.1.A1_at	At5g16440	-	-	3e-1	At5g44900	transmembrane receptor	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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