Co-expression analysis

Gene ID	Gma.6602.2.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g16440: IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) (HF=4e-103)
Module size	6 genes
NF	0.56
%ile	87.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	Gma.6602.2.S1_s_at	BI320883	-	-	4e-103	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.3107.1.S1_at	BE658900	-	-	1e-97	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.97	Gma.10455.1.S1_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.1689.1.S1_s_at	AB007907.1	6-phosphogluconate dehydrogenase	-	1e-114	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	Gma.4300.1.S1_s_at	S46989.1	chalcone synthase	-	5e-29	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	95.8	GSM293553	67_3017.2A.R9A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the grape gene, 1606675_at, orthologous to the query gene, Gma.6602.2.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1606675_at	At5g16440	hypothetical protein LOC100241072	-	1e-97	At3g02780	IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)	O.I.	H.G.	S.X.	Please select
0.59	80.6	1613795_at	At5g16440	hypothetical protein LOC100259254	-	6e-47	At5g52560	ATUSP (ARABIDOPSIS THALIANA UDP-SUGAR PYROPHOSPHORYLASE)	O.I.	H.G.	S.X.	Please select
0.57	79.8	1614800_at	At5g16440	hypothetical protein LOC100251205	-	3e-4	At1g06780	GAUT6 (Galacturonosyltransferase 6)	O.I.	H.G.	S.X.	Please select
0.53	75.2	1619069_at	At5g16440	hypothetical protein LOC100267260	-	3e-24	At2g36330	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	1621434_at	At5g16440	hypothetical LOC100252575	-	5e-2	At3g48050	DNA binding / protein binding / transcription regulator	O.I.	H.G.	S.X.	Please select
0.32	43.1	1609739_at	At5g16440	hypothetical protein LOC100260961	-	1e-9	At5g52580	RAB GTPase activator	O.I.	H.G.	S.X.	Please select
0.25	30.5	1608991_at	At5g16440	hypothetical protein LOC100255967	-	8e-11	At1g67300	hexose transporter, putative	O.I.	H.G.	S.X.	Please select
0.25	30.5	1618217_at	At5g16440	hypothetical protein LOC100266917	-	1e+0	At1g48300	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1608420_at	At5g16440	hypothetical protein LOC100247793	-	8e-86	At3g22845	emp24/gp25L/p24 protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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