Co-expression analysis

Gene ID	Gma.6602.2.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g16440: IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) (HF=4e-103)
Module size	6 genes
NF	0.56
%ile	87.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	Gma.6602.2.S1_s_at	BI320883	-	-	4e-103	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.3107.1.S1_at	BE658900	-	-	1e-97	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.97	Gma.10455.1.S1_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.1689.1.S1_s_at	AB007907.1	6-phosphogluconate dehydrogenase	-	1e-114	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	Gma.4300.1.S1_s_at	S46989.1	chalcone synthase	-	5e-29	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	95.8	GSM293553	67_3017.2A.R9A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.6945.1.S1_at, orthologous to the query gene, Gma.6602.2.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	Ptp.6945.1.S1_at	At5g16440	hypothetical protein	-	6e-38	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.4529.1.S1_at	At5g16440	hypothetical protein	-	4e-138	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.200567.1.S1_at	At5g16440	hypothetical protein	-	2e-39	At1g71190	SAG18 (SENESCENCE ASSOCIATED GENE 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	Ptp.1287.2.S1_s_at	At5g16440	hypothetical protein	-	2e-73	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.135416.1.S1_s_at	At5g16440	hypothetical protein	-	6e-2	At5g50650	WD-40 repeat family protein / St12p protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.2152.2.S1_a_at	At5g16440	hypothetical protein	-	2e-5	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.138176.1.S1_s_at	At5g16440	hypothetical protein	-	7e-5	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.19725.1.S1_at	At5g16440	hypothetical protein	-	3e-1	At1g36380	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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