Co-expression analysis

Gene ID	Gma.6602.2.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g16440: IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) (HF=4e-103)
Module size	6 genes
NF	0.56
%ile	87.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	Gma.6602.2.S1_s_at	BI320883	-	-	4e-103	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	Gma.3107.1.S1_at	BE658900	-	-	1e-97	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.97	Gma.10455.1.S1_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.1689.1.S1_s_at	AB007907.1	6-phosphogluconate dehydrogenase	-	1e-114	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	Gma.4300.1.S1_s_at	S46989.1	chalcone synthase	-	5e-29	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	95.8	GSM293553	67_3017.2A.R9A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, Contig4893_at, orthologous to the query gene, Gma.6602.2.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	85.5	Contig4893_at	At5g16440	-	-	2e-25	At3g02780	IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)	O.I.	H.G.	S.X.	Please select
0.78	91.2	HS05E04u_s_at	At5g16440	-	-	4e-3	At5g35590	PAA1 (PROTEASOME ALPHA SUBUNIT A 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig16573_at	At5g16440	-	-	3e-2	At3g56610	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	HVSMEm0005B11r2_x_at	At5g16440	-	-	4e+0	At2g36020	HVA22J (HVA22-LIKE PROTEIN J)	O.I.	H.G.	S.X.	Please select
0.64	80.9	Contig3420_at	At5g16440	-	-	5e-66	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	O.I.	H.G.	S.X.	Please select
0.64	80.9	Contig2855_at	At5g16440	-	-	2e-3	At1g20450	ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10)	O.I.	H.G.	S.X.	Please select
0.63	80.3	Contig665_s_at	At5g16440	-	-	2e-20	At1g07820	histone H4	O.I.	H.G.	S.X.	Please select
0.63	80.3	Contig6376_at	At5g16440	-	-	1e-10	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig3559_at	At5g16440	-	-	1e-86	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.52	68.3	Contig19935_at	At5g16440	-	-	2e-6	At3g58000	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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