Co-expression analysis

Gene ID Gma.6602.2.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At5g16440: IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) (HF=4e-103)
Module size 6 genes
NF 0.56
%ile 87.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.97Gma.6602.2.S1_s_atBI320883--4e-103At5g16440IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)O.I.H.G.S.X.
0.6786.10.98Gma.3107.1.S1_atBE658900--1e-97At5g62790DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)O.I.H.G.S.X.
0.5778.80.97Gma.10455.1.S1_atBQ628953--3e-8At4g34350HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)O.I.H.G.S.X.
0.4665.50.98Gma.1689.1.S1_s_atAB007907.16-phosphogluconate dehydrogenase-1e-114At3g023606-phosphogluconate dehydrogenase family proteinO.I.H.G.S.X.
0.4360.60.98GmaAffx.90026.1.S1_s_atCF805751--5e-18At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)O.I.H.G.S.X.
0.2532.60.98Gma.4300.1.S1_s_atS46989.1chalcone synthase-5e-29At5g13930TT4 (TRANSPARENT TESTA 4)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.195.8GSM29355367_3017.2A.R9A3L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g16440, orthologous to the query gene, Gma.6602.2.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At5g16440831505IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.O.I.H.G.S.X.
0.5773.8At1g10630837606ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.O.I.H.G.S.X.
0.4050.8At5g63510836470GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.O.I.H.G.S.X.
0.3541.6At5g63400836459ADK1 (ADENYLATE KINASE 1)encodes a protein similar to adenylate kinase.O.I.H.G.S.X.
0.2624.4At5g58030835915transport protein particle (TRAPP) component Bet3 family proteinF:molecular_function unknown;P:ER to Golgi vesicle-mediated transport;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.1811.4At5g13450831186ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putativeF:hydrogen ion transporting ATP synthase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);BOMPFO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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