Co-expression analysis

Gene ID	Gma.6246.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g49230: zinc finger (C3HC4-type RING finger) family protein (HF=3e-1)
Module size	23 genes
NF	0.33
%ile	61.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.6	0.96	Gma.6246.1.S1_at	AW348532	-	-	3e-1	At1g49230	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	Gma.2677.1.S1_at	CA937161	-	-	8e-7	At2g46370	JAR1 (JASMONATE RESISTANT 1)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.97	Gma.2101.1.S1_at	BI699353	-	-	2e-32	At4g33950	OST1 (OPEN STOMATA 1)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.96	GmaAffx.35629.1.S1_at	BG839460	-	-	4e+0	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	GmaAffx.72081.1.S1_at	BU763529	-	-	1e-4	At1g67530	armadillo/beta-catenin repeat family protein / U-box domain-containing family protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.97	Gma.593.1.S1_x_at	AW351331	MYB transcription factor MYB176	-	1e-11	At1g74840	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.97	GmaAffx.2211.2.S1_at	BE608037	-	-	1e-6	At4g25180	DNA binding / DNA-directed RNA polymerase	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.96	Gma.4818.1.S1_s_at	CD394552	-	-	4e+0	At5g26667	PYR6	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.97	GmaAffx.88546.2.S1_at	BE805348	-	-	3e-4	At3g53100	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	Gma.7102.1.S1_a_at	AW309275	-	-	1e-8	At1g15740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.96	Gma.10975.2.S1_s_at	BQ743096	-	-	5e-6	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.97	Gma.2831.1.S1_s_at	AW349413	-	-	1e-8	At1g66140	ZFP4 (ZINC FINGER PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	GmaAffx.91328.1.S1_s_at	CF807053	-	-	2e-5	At1g15740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.97	GmaAffx.93131.1.S1_s_at	CF807895	-	-	3e-2	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.97	GmaAffx.51673.1.S1_at	BI892643	-	-	2e-1	At4g05530	IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.97	Gma.1370.1.S1_at	BQ079614	-	-	5e-2	At2g15230	ATLIP1 (Arabidopsis thaliana lipase 1)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.96	Gma.3077.1.S1_at	BG650242	bZIP transcription factor bZIP117	-	1e-2	At4g36730	GBF1	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.97	GmaAffx.91844.1.S1_s_at	CF807569	-	-	1e+0	At2g23320	WRKY15	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	Gma.12040.1.S1_at	CA783276	-	-	2e-2	At4g39870	-	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.97	Gma.1320.2.S1_a_at	BM523412	-	-	7e-3	At2g22080	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	GmaAffx.1876.2.S1_at	BG510959	-	-	5e-7	At3g62980	TIR1 (TRANSPORT INHIBITOR RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.97	Gma.9031.1.A1_at	AW349324	-	-	5e+0	At5g27510	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.98	Gma.15087.1.S1_at	BI968833	-	-	5e+0	At1g01530	AGL28 (AGAMOUS-LIKE 28)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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